Pseudomonas nunensis: NK667_12880
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Entry
NK667_12880 CDS
T08997
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
pnb
Pseudomonas nunensis
Pathway
pnb02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
pnb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
NK667_12880 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pnb02044
]
NK667_12880 (tssC)
Secretion system [BR:
pnb02044
]
Type VI secretion system
Imp/Vas secretion system core components
NK667_12880 (tssC)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
DUF3135
Motif
Other DBs
NCBI-ProteinID:
UTO17200
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All DBs
Position
complement(3011753..3013291)
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AA seq
512 aa
AA seq
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MSVENSSVQLRGATVLSEDRNSVYGALFNKINLNPVDELVGIEVFQNSEALSDVSADERV
TAAVSVLLKLLKQSPQKVERLDKVLLDEHIASLDMQISRQLDAVMHHPDFQRVESTWRGV
KSLIDQTDFRQNVRIELLDISKDHLVQDFEDAPEIAQSGLYLHTYTQDYDTPGGEPIAAA
ISNFEFDRSPQDIALLRNISKVSAAAHMPFIGSVGPAFFGKESMEEVAAIKDIGNYFDRA
EYIKWKAFRDSDDARYIGLTMPRVLGRLPYGPDTAPVRSFNYIESVKGPDHDKYLWTNAS
FAFAANMVKSFIANGWCVQIRGPQSGGAVTELPIHLYDLGTGNQVKIPSEVMIPETREFE
FANLGFIPISYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYL
KLIQRENIGTTKDRRLLELELNKWIGGLVTEMTDPGDDLQASHPLRDAKVTVEDIEDNPG
FFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtagaaaattccagcgtgcaattgcgcggcgctacagtattgtctgaagatcgt
aatagtgtttatggtgccctgttcaataaaatcaatctaaatccggttgatgaattggta
ggtattgaggttttccagaactctgaggcgctgtctgatgtttcggctgatgaacgggtg
acagcagccgttagtgtgttgttgaaactgcttaagcaatcaccgcaaaaggtcgagcgc
ttggataaagtcctgctggacgagcatatcgcttcattggatatgcaaatcagccggcaa
ctggatgcggtcatgcaccatccggactttcaaagagtcgagtcaacctggcgcggcgtg
aaatcccttattgatcagacggattttcgtcagaacgtgcgtatagagctgttggatatc
agcaaggatcatctggtgcaggacttcgaggatgcgccggagatcgcccagagtggcttg
tatcttcatacctacacacaggattacgacacccccggtggcgagccaattgcggcggct
atttctaacttcgaattcgaccgcagcccgcaggatatagcgctcctgcgcaatatttcg
aaggtgtccgcagccgcccatatgccatttatcggttccgtaggtccggcgttctttggc
aaagagtccatggaggaggtggctgcgatcaaggacatcggtaactactttgatcgcgcc
gaatacatcaagtggaaggcattccgtgacagtgacgatgcacgttacatcggtctgacc
atgccacgggtcttgggccgcttgccctatgggcctgacactgctcccgtgcgcagcttc
aattacattgaaagcgttaaggggccggaccatgacaaatacctgtggaccaatgcgtcg
tttgccttcgctgccaacatggtcaagagcttcatcgccaatggctggtgtgtgcagatt
cgtgggccgcagtcgggtggcgccgtcaccgagttgccgatccatttgtatgacctgggc
actggcaatcaggtcaaaatcccctccgaagtgatgatcccggaaacgcgcgagttcgaa
ttcgccaacctcggtttcattcctatctcgtactacaaaaatcgcgactacgcgtgtttc
ttctcggccaactccgctcagaaaccggcgctctacgacacggccgacgccactgccaac
agtcgaatcaacgcacgcctgccttacatctttctgctctcacgcatcgcccattacctg
aagctgatccagcgtgaaaatataggcacgaccaaggaccgtcgtttgctggaactggag
ctgaacaaatggattggcgggctggtcaccgaaatgactgatccgggcgatgacttgcag
gcctcacacccgctgcgggatgcaaaggtgacggtcgaagacattgaagacaaccccggt
ttctttcgcgtcaagttgtacgccgtgccgcacttccaggtcgagggaatggacgtgaac
ctgtcgctggtttcgcagatgcccaaggcaaaagcctga
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