KEGG   Pseudomonas aeruginosa NCGM2.S1: NCGM2_2561
Entry
NCGM2_2561        CDS       T01974                                 
Name
(GenBank) putative transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
pnc  Pseudomonas aeruginosa NCGM2.S1
Brite
KEGG Orthology (KO) [BR:pnc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pnc03000]
    NCGM2_2561
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pnc02044]
    NCGM2_2561
Transcription factors [BR:pnc03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    NCGM2_2561
Secretion system [BR:pnc02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   NCGM2_2561
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 AAA_5 GAF_2 HTH_30 AAA_16 AAA_2 HTH_50 GAF AAA_7 AAA TIP49
Other DBs
NCBI-ProteinID: BAK89419
LinkDB
Position
1:2745384..2746895
AA seq 503 aa
MFSRVPQPLAFAEALLAQFGALSRETDIAALLGGFARAVGELSGCELSQLYLLDQTHTAL
TLNAECRDGLLQALEPSSLPADYTGEQLLQFALCQNRVVSLVDLPSRLHETGFLPAGEQP
WLSLLCVPLVSPEKTVEGMVVCATRRPLDLQGFAHPLGQLGSFVLAQLHLLQRLSQPSGE
PQGPSSAPVVSGYGLIGRSAAMRETCRLISKVLHNPYTVLLQGETGTGKEVVARAIHEYG
PRRAQAFVVQNCAAFPENLLESELFGYRKGAFTGAERDRPGLFDAADGGTLLLDEIGDMP
LSLQAKLLRVLQEGEIRPLGGNDTHKVDVRIIAATHRDLALLVRDGKFREDLYYRLAQFP
IELPPLRQREGDALELARHFAERACVFLRRAPLGWSAEALELLDGYGFPGNVRELKGLVE
CAVLLCEGEVLLAEHFSLRAPPEAEAPLKLREHLEQIERDLLLACLRRNAGNQTLAAREL
GLPRRTLIYRMGRLNIHFGDPRT
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgttcagccgcgtaccgcaacccctggccttcgccgaagccctgctcgctcagttcggc
gcgctgtcgcgggaaactgacatcgcggccctgctgggcggtttcgcacgcgcagtcggc
gaactcagcggctgcgagctgagccagctgtatctgctcgaccagacccataccgcgctc
accctcaacgccgaatgccgggacggcctgttgcaggcgctggagccgtcgagcctgccg
gcggactacaccggcgagcagttgctgcagttcgccctgtgccagaaccgcgtggtcagt
ctcgtcgacctgccgtcgcggctgcacgagaccggcttcctgccggcaggggagcagccc
tggctgtccctgctctgcgttccgctggtgagcccggagaaaacggtcgagggcatggtg
gtctgcgccacccggcgcccactggacctgcagggattcgcccatccactgggccagttg
ggctcgttcgtgctggcccagctgcatctgctgcaacgcctctcgcaaccctccggcgag
ccgcagggaccgtccagcgcgccggtggtcagcggctacgggctgatcggcaggagcgcg
gcgatgcgtgagacctgccgcctgatcagcaaggtcctgcacaacccctataccgtgttg
ctgcagggcgagaccggtaccggcaaggaggtggtcgcacgggcgatccacgagtacggc
ccgcggcgagcacaggcgttcgtggtgcagaactgcgcggcgtttccggaaaacctgctg
gaaagcgagctgttcggctaccgcaagggcgcctttaccggtgccgagcgcgatcgtccc
gggttgttcgatgccgcggatggcggaaccctgctgctcgacgaaatcggcgacatgccc
ctgtcgctccaggccaagctgttgcgcgtgttgcaggaaggcgagattcgcccgctcggc
ggcaacgacacgcacaaggtcgatgtacgcatcatcgccgctacccaccgtgacctcgcc
ctgctggtacgcgatggcaagttccgcgaagacctctactaccggctggcgcagtttccc
atcgagttgccgccgttgcgccagcgcgagggcgacgccctcgaactggcccggcatttc
gccgaacgcgcctgcgtgttcctgcgccgcgcgccgctgggctggtccgcggaagcgctg
gaactgctcgacggctatggctttcccggcaacgttcgggagctgaagggactggtggaa
tgcgcggtactgctctgcgaaggcgaggtgctgctggccgaacacttttccctgcgcgcg
cccccggaagcggaggcgccgctcaagctgcgcgagcacctggagcagatcgaacgggac
ctgctgctcgcctgcctgcgcaggaacgctggcaaccagaccctcgccgcgcgcgaactg
ggtctgccgcgacgaaccctgatctatcgcatgggacgcctgaacattcatttcggcgat
ccccggacctga

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