Paenibacillus naphthalenovorans: IJ22_05010
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Entry
IJ22_05010 CDS
T04167
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pnp
Paenibacillus naphthalenovorans
Pathway
pnp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
IJ22_05010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnp03400
]
IJ22_05010
Enzymes [BR:
pnp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
IJ22_05010
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
IJ22_05010
DNA repair and recombination proteins [BR:
pnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
IJ22_05010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn-ribbon_8
NFACT_N
zinc-ribbons_6
Zn_Tnp_IS91
Motif
Other DBs
NCBI-ProteinID:
ALS20889
UniProt:
A0A0U2U2V8
LinkDB
All DBs
Position
514615..515475
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AA seq
286 aa
AA seq
DB search
MPELPEVETVRRTLNQLVIGKTVERVSVKLPRIIQYPEDIERFQLLLSGETIQSVERRGK
FLRFMFDHYTLVSHLRMEGRYGVYRSGEPEERHTHVVFYFTDGTELRYKDVRQFGTMHLY
PKDQDLQEAPLKKLGLEPLDEAFTFEAFRDRIGSRPTKIKPLLLNQEYIVGIGNIYVDES
LFLAGIHPEREARSLSRHELAKLYEAVVRTLKEAVAAGGSTIKSYVNGQGEIGMFQHQFK
MYGRKDEPCFHCGHKIEKMVIGGRGTHYCPKCQPLKRRRSKGALKR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccagaggtagaaacggtccgaaggacgctgaatcaactggtgatcggc
aagacggtggaacgggtttcggttaagctgccgcgaatcattcagtatccggaggacatt
gagagatttcaactgctgctcagcggggaaaccattcagtccgtcgaacgcagaggcaag
tttttgcggtttatgttcgaccattatacgctggtctcgcatcttcgcatggaaggcagg
tacggtgtgtatcgcagcggggagccagaggaacggcatacccatgtcgtgttttatttt
acagacggtaccgagctgagatataaggatgtgcgccagttcgggacaatgcatctttac
ccgaaggatcaggatttgcaggaagccccgctgaagaagctggggctggagcctttggac
gaagcatttacattcgaggctttccgggaccggatcgggtcgcgtccgaccaaaatcaag
ccgctgctgttgaatcaggaatatattgtagggatcgggaatatctatgtagacgaatcg
ttgtttctggctggcattcatcccgaaagggaggccagaagcttaagccggcatgagctg
gccaagctgtatgaggcggttgtgaggaccttgaaggaggcagtggctgcaggcggctct
accatcaagtcctatgtgaacggccagggcgaaatcggtatgtttcagcatcagttcaaa
atgtacggccgaaaagacgaaccttgtttccattgcgggcataaaatcgaaaaaatggtt
atagggggacgagggacccattattgccccaagtgccagcctctaaaacgcaggagaagc
aaaggggctttaaaacgctaa
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