Paenarthrobacter nicotinovorans: JMY29_03730
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Entry
JMY29_03730 CDS
T08055
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pnv
Paenarthrobacter nicotinovorans
Pathway
pnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JMY29_03730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnv03019
]
JMY29_03730
03400 DNA repair and recombination proteins [BR:
pnv03400
]
JMY29_03730
Enzymes [BR:
pnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JMY29_03730
Messenger RNA biogenesis [BR:
pnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JMY29_03730
DNA repair and recombination proteins [BR:
pnv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JMY29_03730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
MFS18
Motif
Other DBs
NCBI-ProteinID:
UKF04710
LinkDB
All DBs
Position
760103..762268
Genome browser
AA seq
721 aa
AA seq
DB search
MANNSPNTAAPVQSTTQQEALACLRELVGHPEAQFHDGQFEAIEALVDAGRRALVVQRTG
WGKSAVYFVSSLLLRRRGAGPTLIVSPLLALMRDQVAAAARAGVRAVAINSANALEWDTV
LAQLAADEVDVLLVSPERLTNPSFRENQLPELIRRTGLLVIDEAHCISDWGHDFRPDYRR
ISDLIAQLPETVPVLATTATANSRVVHDIEEQLGAGVLTIRGGLGRESLRLGVLNLSDSK
DRLGWLLTHLADMPGSGIIYTLTVSAAEDTARLLAGAGHNVLSYTGRTDPADRERAEQLL
KDNQVKALVATSALGMGFDKPDLGFVIHLGAPSSPVAYYQQVGRAGRGAANADVLLLPGS
EDREIWQYFATASMPSEEKAAAVLAVLGDAGTAMSTVALEARVDLRRTPLELLLKVLAVD
GAVERVGGGWRSTGRPWNYDAERYARIAEARVDEQDSMVVYQDTAGCRMEYITSVLDDET
AAACGRCDNCAGRWFPVDVADSAVEAADQTLRRAGIAIEPRLQWPSGMDRLGVAVKGKIK
PDESVAEGRVLARLTDLGWGGALRELFAAGAPDRAVDQGMLQACVQVLREWSGAEGGTPW
SGVGRPVAVVSIPSRSKPQLVDSLAQGIAGIGRMPYLGQLQPAHGGPTGARGGNSAYRLA
GVWDRLVVGPELAQALADIGSQPVLLVDDLVDSRWTMTVSARALRQAGAAAVLPLALAQA
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaactccccaaacactgccgctcccgtgcaatcgacaacccagcaggaggcg
ctggcttgccttcgcgaacttgtaggccaccctgaggcgcagttccacgatggccagttc
gaagcgatcgaggctttggtggatgccggccgaagggcgctcgtggtccagcgcaccggc
tggggaaagtccgccgtctacttcgtttcatccttgctcttgcgccgcaggggagccgga
ccgaccctgatcgtctcacccctgctggcgctcatgcgtgaccaggtggccgccgctgcg
cgtgcaggtgtccgtgctgtggccatcaattccgccaacgcccttgaatgggacacagtc
ctggcccagttggcggcagacgaggtcgacgttctcctcgtgtctcccgagcgcctgacc
aatccgtccttccgggagaaccagcttccggagcttatccggaggacagggcttctagtg
atcgacgaagcccactgtatttccgactggggacacgacttccggcccgattaccgccgc
atctccgacctcatcgcccagttgccggagaccgttccagtcctggcaaccactgctact
gccaactccagggtggtccatgacattgaagagcagctcggcgcaggagtgctgaccatc
cgcgggggcttggggcgggagtcgctgcgtcttggggtccttaatctctccgactccaag
gaccggctgggctggctgctgacccaccttgcagacatgccggggagcggcatcatttat
acgctcaccgtctctgcggccgaggacactgcgcggttgcttgccggagccggacacaac
gtgctctcttacacaggcaggaccgatcccgctgaccgggagcgggcagagcaactgctc
aaggacaatcaggtgaaggcgctggtggcaacctctgccctgggcatgggcttcgacaaa
cccgacctcggcttcgtgatccaccttggggcgccatcatcaccggtcgcctactaccag
caagtcggccgcgcgggccgtggcgccgccaatgccgatgtactgctccttcctgggtcg
gaagaccgcgagatctggcaatacttcgctacagcatccatgccgtccgaggagaaggca
gctgccgtgctggctgtcctcggcgatgccggcacagccatgtccaccgtcgcattggaa
gcccgcgtggaccttcgccggacgccactggaattgctcttgaaggttttggcggtggat
ggcgccgtcgagcgcgttggcggcggttggcggtcaaccggccggccatggaattacgac
gccgaacgctatgcgcgcattgccgaggcgcgggtggatgagcaggattccatggtggtc
taccaggacacggccggttgccggatggagtacatcacctcggtgcttgatgatgaaact
gctgccgcctgtggacgttgtgacaactgtgcgggccgatggttccctgtggatgtggcg
gactcggcggtggaggcggcagatcagactcttcgccgggcaggaatcgcaatagagccg
cgccttcaatggcccagcggaatggaccggctcggtgttgccgtcaagggaaagatcaaa
cccgacgaaagcgttgcagagggacgtgtcctggccaggctgacagaccttggctggggc
ggcgccctccgtgaactgtttgctgccggtgcgccggaccgggccgtagatcaggggatg
ctgcaggcatgcgtgcaggtcctgagggagtggtcaggcgccgagggcggaacgccgtgg
agcggcgtcggacgcccggtggccgtcgtcagcatcccgtcgcgaagcaaaccgcaacta
gtggattcgctggcccaggggatagccggaataggcagaatgccgtacttggggcagctg
cagccggctcacggtggtccaaccggcgcgcgtggcggcaatagcgcctacaggctcgcc
ggcgtgtgggaccggctggtggtcgggcctgaacttgcccaggctcttgccgatattggg
agccagcctgtgttgttggtggacgatctggtcgacagtcgctggacgatgacggtatcg
gcacgggctttgcggcaggcaggcgcagcagcggtcctcccacttgcattggcgcaagcg
gggtag
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