Pseudodesulfovibrio nedwellii: SYK_34490
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Entry
SYK_34490 CDS
T09024
Symbol
hemB
Name
(GenBank) delta-aminolevulinic acid dehydratase
KO
K01698
porphobilinogen synthase [EC:
4.2.1.24
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00860
Porphyrin metabolism
pnw01100
Metabolic pathways
pnw01110
Biosynthesis of secondary metabolites
pnw01120
Microbial metabolism in diverse environments
pnw01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
SYK_34490 (hemB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnw04147
]
SYK_34490 (hemB)
Enzymes [BR:
pnw01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.24 porphobilinogen synthase
SYK_34490 (hemB)
Exosome [BR:
pnw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
SYK_34490 (hemB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALAD
Motif
Other DBs
NCBI-ProteinID:
BDQ39089
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All DBs
Position
complement(3744994..3745974)
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AA seq
326 aa
AA seq
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MIPSDFFRGRRLRSSLAMRELVRENMVTANDLIMPYFVVETDDDSFKKEISSMPGQYQLS
LTQLKIKVAEAVADGLKACILFGIPAEKDEVGSGAYDDMGIVQKAIRLLKDTFPELVVIA
DTCLCEYTSHGHCGMVKNEYVQNDPTLNLLAKAAVAQAKAGADMVAPSDMMDGRVAAIRA
ALDDAGFTNTPIMSYAIKYASAFYGPFREAAESTPQFGDRKTYQMDPPNSREGMREAVAD
LEEGADILMVKPGLPYLDMVRQVRDTFDTPVAVYQVSGEYSMIKAAAQNDWIDEMGVVME
SLVAFKRAGADLILTYFTEDVLKALK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgattccctctgattttttccgtggccgtcgccttcgctccagtctcgccatgcgagaa
ctggtccgcgaaaacatggtcactgccaatgacttgatcatgccctatttcgtggtcgaa
accgatgacgattcctttaaaaaagaaatctcatccatgcccggccaatatcagctttct
ctgacacaactgaaaatcaaagtagccgaagccgttgccgatggcctcaaagcctgcatc
cttttcggtattcctgccgaaaaagacgaagttgggtccggtgcatacgacgacatgggc
attgtccaaaaggccattcgtctgctcaaggacacatttcccgaactcgtggtcatcgct
gacacctgtctgtgcgagtatacctcccacggccattgcggcatggtgaaaaacgaatac
gttcaaaacgaccccactttgaatcttctggccaaggccgctgtagcccaagccaaggcc
ggagctgacatggtggccccgtctgatatgatggatggccgtgttgccgccatccgcgcc
gcactggatgacgctggttttaccaacaccccgatcatgtcttacgcgataaaatacgca
tcggcattctacggcccattccgcgaagccgccgaatccaccccgcaattcggggaccgc
aagacctaccagatggatcctcccaattcccgcgaaggcatgcgcgaagccgttgccgat
ctggaagaaggtgcggacatcctgatggtcaagcccggcctgccgtatctcgacatggtc
cgtcaggtgcgagacacttttgacacgcctgtggccgtctatcaggtcagcggcgaatac
tcgatgatcaaggccgctgcccaaaacgactggatagacgaaatgggcgtggtcatggaa
tccttggttgccttcaaacgcgccggggctgatcttattctcacatactttacagaagac
gtcttaaaggcattgaaataa
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