Polaromonas sp. JS666: Bpro_1516
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Entry
Bpro_1516 CDS
T00343
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pol
Polaromonas sp. JS666
Pathway
pol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bpro_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pol03019
]
Bpro_1516
Enzymes [BR:
pol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bpro_1516
Messenger RNA biogenesis [BR:
pol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bpro_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABE43464
UniProt:
Q12DC8
LinkDB
All DBs
Position
1571909..1573387
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AA seq
492 aa
AA seq
DB search
MTSSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLQGKDVMGAAQTGTGKTAAFSLP
LLQRMLKHENASTSPARHPVRALVLLPTRELAVQVAEQVKLYAKHTNLRSAVVFGGMDMK
PQTLELKQGVEVLVATPGRLLDHIEAKNTVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRITLLFSATFSPEIKRLASSYLQDPVTIEVARSNATASTVEQHFYSVGADDKRRAL
HQILKERGMKQAFVFVNSKLGCARLARSLEREGLKTTALHGDKSQDERLKALDAFKKGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVSFVASSDQRL
VADIEKLIKTKIELEPIEFDEDRPRISEQGRINDGRRMYRQGNEGEEGAGREAFVSREPR
DRERRERREYTPHRQPAAPRDPFFDQPYEATTVIADAQPSWEAAAKAGPARSSVSANIKP
KKKVAALFKTSD
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatctttttccaatctttcgctggcagaaccgctggcccgcgccgtagccgaa
atgggctacgaaaccatgacacccattcaggaacaggccattccggtcgtcctgcagggc
aaagacgtgatgggcgccgcgcagaccggtaccggtaaaaccgctgctttttcgctgccg
ctgctgcagcgcatgctcaagcacgagaacgcctcgacctcgccggcgcggcaccccgtg
cgtgcgctggtgctgctgcctacccgcgagctggccgtccaggtggccgaacaggtcaag
ctctacgccaagcacaccaacctgcgcagtgccgtggtgtttggcggcatggacatgaag
ccgcaaacgctggagctcaaacaaggcgttgaagtgctggtggccacgccgggccgcctg
ctcgaccacatcgaagccaaaaataccgtgctcaaccaggttgaatatgtggtgctcgac
gaagccgaccgcatgctcgacatcggcttcctgccggatctgcagcgcattctgagctac
ctgcccaagcagcgcatcacgctgctgttttcggcgaccttctcgcctgaaatcaagcgc
ctggcctcaagctacctgcaggatccggtgacgattgaggtggcgcgttccaacgccacc
gcctcgacagtcgagcagcatttctacagcgtgggcgctgacgacaagcgccgcgccctg
caccagatcctcaaagagcgcggcatgaagcaggcctttgtgttcgtcaacagcaaactc
ggctgtgcacgcctggcccgctcactggaacgcgaaggcctgaaaaccaccgcgctgcac
ggcgacaagagccaggacgaacgcttgaaggcgctggatgccttcaaaaaaggcgaggta
gacctgctggtgtgtaccgacgtcgcagcgcgcggcctggacatcaaggatgtgccggcg
gtgttcaacttcgacgtgcccttcaatgccgaagactatgtgcaccggattggccgcacc
ggccgtgccggggcttcaggcctggccgtgagttttgtcgccagcagcgaccagcgcctg
gtggcagatattgaaaagctgatcaagaccaagatcgagctggagccgatcgagtttgac
gaggaccgcccgcgcatcagcgagcagggccgcatcaacgacggccgccgcatgtaccgt
cagggcaacgaaggcgaggagggcgcggggcgtgaagcgtttgtttcgcgggaaccgcgc
gaccgggaacgcagggagcgtcgcgagtacacgccgcatcgccagccggcggcgccgcgt
gatccgttttttgaccagccctacgaggcaacaaccgttatagcggacgcgcaaccgtcc
tgggaagccgccgccaaggccggccctgcgcgcagcagcgtctcggccaacatcaagccg
aagaaaaaagtcgctgcactgttcaagaccagcgactga
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