Populus trichocarpa (black cottonwood): 18100001
Help
Entry
18100001 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC18100001
KO
K13917
mRNA-capping enzyme [EC:
2.7.7.50
3.6.1.74
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
18100001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
18100001
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.50 mRNA guanylyltransferase
18100001
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.74 mRNA 5'-phosphatase
18100001
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
18100001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
mRNA_cap_enzyme
mRNA_cap_C
DSPc
DNA_ligase_A_M
Y_phosphatase2
Y_phosphatase
Y_phosphatase3
DSPn
Motif
Other DBs
NCBI-GeneID:
18100001
NCBI-ProteinID:
XP_006381232
LinkDB
All DBs
Position
6:7294038..7306055
Genome browser
AA seq
681 aa
AA seq
DB search
MVVTMDLNVSPVPEGDEDNSEGHVEEYSPAGERSESAVETARREREERRKRLRNECSDDR
PVHVSQQPVHDQFFPSKRYKSYDKSKLPPGWLDCPAFGQEINCIVPSKVPLGEAYNDCIP
PGKRYSFKQVIHQQRVLGRKLGLVIDLTNTTRYYSTVDLKKEGIKHVKIYCKGRDAVPEN
TAVNTFVYEVMQFLLRQKHTKKYILVHCTHGHNRTGYMIAHYLMRSQLMSVTQAIDIFAE
ARPPGIYKPDYIDALYSFYHERKPITVVCPPTPEWKRSSEFDLNGEAVPDDDDDDGGSAT
SVHGNHEMAVTMTNDDVLGDEIPNDQLDALRQFCYQALKLNGRGNSQFPGSHPVSLSRDN
LQLLRQRYYYATWKADGTRYMMLITVDGCFLIDRNFKFRRVQMRFPCRYTNEGPADKMHH
FTLLDGEMIIDTMPDSQKQERRYLIYDMMAVNQVSVIERPFHERWKMLEKEVIEPRNTER
QSIYQSRNPNYRYDLEPFRVRRKDFWLLSTVTKVLKEFIPRLSHDADGLIFQGWDDPYVT
RTHEGLLKWKYPEMNSVDFLFEVDDDDRQLLYLHERGKKKLMEGHRVSFKDALDPSSYSG
KIVECSWDSEERVWVCMRIRTDKSTPNDFNTYKKVMRSINDNITEDVLLNEIYEIVCLPM
YADRIRIESKAQQHANAVRRK
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggttgttaccatggatttaaatgtgtcgccggtacctgaaggcgacgaagataattct
gaagggcacgtagaagaatacagtcctgctggtgaacggtcagagtctgctgtcgaaact
gcccgcagggaacgtgaagaaagacgtaagcgtttgagaaatgaatgctcagatgacaga
cctgtacatgtgtctcagcaaccagtgcacgatcaattttttccatctaaacgctataaa
tcatatgataaaagcaaacttcctcctggctggttggactgtcctgcatttggccaggaa
ataaattgtatcgttccttctaaggttccactcggtgaagcttacaatgactgcattcct
cctggtaaaagatactcctttaaacaagtcattcatcaacaaagagttttaggaaggaaa
cttggtctggtgattgatttgacaaatactactcgctactattcaacagtagatttgaag
aaagaaggtatcaagcatgtcaagatatattgcaaggggcgtgatgctgtaccagagaat
acagctgtaaatacctttgtttatgaggtcatgcaattcctcttgcgtcagaaacataca
aagaagtatattcttgttcattgtacacatgggcataatcgtacaggatatatgatagct
cattatttaatgcgttcacaactaatgtctgtcactcaggcaatagacatatttgctgaa
gcacgtcctccaggaatatacaagccagattatatcgatgccttgtactcattctatcat
gaaagaaagccaataacggttgtttgcccaccaactccagagtggaagaggtcttctgaa
tttgatctcaatggtgaggcagtgcctgatgatgatgatgatgatggaggttcagctact
agcgtgcatggcaatcatgagatggctgtcacaatgacaaatgacgatgttctgggggat
gaaatacctaatgaccagctggatgcactgcggcagttttgctaccaagcacttaagttg
aatggaagaggaaattcacaattcccaggatcacaccccgtttctctaagcagggacaac
ttacagctgttaaggcagcgttattattatgcaacatggaaggctgatggaacaagatac
atgatgttaattacagtggatgggtgctttttgatagataggaattttaaattccgaagg
gtacagatgagatttccttgtagatacaccaatgaaggtccagctgataagatgcaccac
tttacattacttgatggggagatgattattgatactatgccggactcacagaagcaggag
agaagataccttatctatgatatgatggcagtcaaccaagtgtctgtcatagagcggccc
tttcatgaacgatggaagatgcttgaaaaagaagtgattgagccccgaaatactgaacgc
caaagtatttaccagagtcgaaatccaaattatagatatgacctggaacccttcagggtg
agaagaaaggatttctggctgctttctactgttaccaaggtcctaaaggaatttattcca
aggctttcacatgatgcagatggtcttatttttcagggttgggatgatccctatgttact
cgcactcatgaaggccttctgaagtggaaatatcctgaaatgaactcagttgactttcta
tttgaggttgatgatgatgaccgtcagttgctttatctgcacgagcgagggaaaaagaaa
ctgatggaaggccaccgagtttccttcaaagatgctctagatccctcttcatactctggg
aagatagttgagtgttcttgggattcagaggaacgtgtgtgggtctgtatgcggatccgg
actgataaatcaacaccaaatgatttcaatacctacaagaaggttatgcgaagcatcaat
gacaatataacagaggatgtgttgttgaatgagatttatgagatcgtttgcctgcccatg
tatgctgataggatcaggattgagagtaaagctcagcagcatgcaaatgcggtacgtcgt
aagtga
DBGET
integrated database retrieval system