Populus trichocarpa (black cottonwood): 18109257
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Entry
18109257 CDS
T01077
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
18109257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
18109257
03036 Chromosome and associated proteins [BR:
pop03036
]
18109257
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
18109257
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
18109257
RSF complex
18109257
WICH complex
18109257
B-WICH complex
18109257
NORC complex
18109257
BRF complex
18109257
NuRF complex (fruit fly)
18109257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
Myb_DNA-binding
DEAD
DBINO
HDA2-3
AAA_14
Motif
Other DBs
NCBI-GeneID:
18109257
NCBI-ProteinID:
XP_024466426
LinkDB
All DBs
Position
10:3124182..3132579
Genome browser
AA seq
1059 aa
AA seq
DB search
MAKPSKQQTSSDEAMSSEEEPINEQVSEEEDEEEIEAVARSADSDEDEAAGDAEGDDGEG
DEADEEVTNNEISKRERERLKEMQKLKKHKIQEILDQQNAAIDADMNNRGKGRLQYLLQQ
TELFAHFAKHDQSSSQKKAKGRGRHASKVTEEEEDEECLKEEEDGISGNTRLMTQPSCIQ
GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEFRGITGPHMVVAP
KSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLAAGKFDVCVTSFEMAIKEKSTL
RRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPE
IFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMS
QMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYSTGDHLV
TNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRD
ASIDAFNKPGSEKFCFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQK
KEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMV
FSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENK
FDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNT
QRLSELYEKEVRYLMQAHQKNQLKDTIEVDEPEETGDPLTAEELEEKERLLEEGFSSWSR
RDFNTFIRACEKYGRNDIRSIATEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERG
EARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNW
DELKAAFRTSALFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAK
QSMTPSKRSMGRQTDSPPSLKKRKQLSMDDYPNMGKRKK
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccttcgaagcagcaaacatcatctgatgaggcgatgtcttcggaggaagag
ccaattaacgagcaggtcagcgaagaggaagatgaggaggagatcgaagcggtggctcgc
tcagcggactccgatgaagatgaggccgccggagatgctgaaggagacgacggcgaaggc
gacgaggctgacgaggaagtaaccaacaatgaaattagcaagcgtgaaagggagagactc
aaagaaatgcagaaattgaagaaacacaagattcaggagatactggatcaacaaaatgct
gctatagatgctgatatgaataacagggggaaggggcgcttgcagtatttgctgcagcaa
actgagttgtttgctcattttgctaaacatgatcaatcatcatcccagaagaaggctaag
ggaaggggtcggcatgcctcaaaagtaaccgaggaggaggaagatgaagaatgcttgaag
gaggaagaagatggtatatcaggaaacacacggctgatgacacagccatcatgtattcaa
ggaaagatgagggattaccagcttgctggattgaactggcttataagactgtatgagaat
ggtataaacggaattcttgcagatgaaatgggtcttggcaaaaccttacaaacaatctct
ttaatgggctacctgcatgaattcagaggaatcactggtcctcatatggtagtggctcca
aaatctacacttggtaactggatgaatgaaattcgtcgtttttgtccagttttacgtgct
gtcaagtttcttggcaatcctgatgaaagaaaacatatacgtgaagagttgctggctgct
gggaaatttgatgtttgtgttacaagctttgaaatggccatcaaagagaagtccaccttg
cgtcgcttcagttggcggtatattatcattgatgaagctcatcggattaagaatgaaaat
tctctcctttcaaaaacaatgaggctttataacactaattaccgcctcctcattactgga
actccacttcagaacaatcttcacgaactctgggctcttctcaactttcttctgccagag
atatttagctcagctgaaacttttgatgaatggtttcaaatttctggtgaaaatgaccag
caggaagttgttcaacaactgcacaaggtccttcggccatttcttctccgaagattgaaa
tcagatgttgagaaaggtttgcctcccaaaaaggaaaccatactgaaggttggcatgtcc
cagatgcagaaacagtactacaaggctttgttgcagaaagatcttgaagttgtaaatgct
ggtggagaacgtaagcgtcttttgaacatagcaatgcagctccgaaaatgctgtaaccat
ccatatcttttccagggtgctgaacctggtccaccatactctacaggagaccatcttgtt
accaatgctggtaagatggttttgttggataagttgcttcctaagctcaaagagagggat
tccagggtcttaattttttcacagatgacaaggttgcttgacattcttgaagactatttg
atgtttcgtgggtatctgtattgtcggattgatggaaataccggtggagaagatcgtgac
gcgtccatcgatgcctttaacaagccaggaagtgagaaattttgcttcttgttgtcaaca
agagctgggggactgggtattaatcttgccactgcagatgttgtcattctttatgacagt
gactggaacccacaagttgatttacaagctcaggaccgtgctcataggattggtcaaaag
aaagaagtccaagtgttccgtttttgcacggagtatacaattgaggaaaaagtgattgag
agggcttataagaagcttgcacttgatgccttggttatccaacaaggaagattggcggag
cagaaaactgttaataaagatgagctgcttcaaatggtgaggtttggggctgaaatggtt
ttcagctctaaggatagtaccattacagatgaggacattgacagaatcattgctaaggga
gaagaggcaacagctgagcttgatgccaagatgaagaagtttacagaagatgcaatcaag
tttaaaatggatgacactgctgaattatatgattttgatgacgataaggatgagaacaag
tttgacttcaagaaaattgtcagtgagaactggattgaacctccaaagagggagcggaag
cgcaattactcagaatccgaatacttcaagcaaacaatgcgccagggtggtccagcaaaa
ccaaaagaacctcgaattcctcgcatgcctcaattgcatgatttccagtttttcaacaca
caaaggcttagtgagctgtatgaaaaagaagtacgctacctcatgcaagcacatcaaaag
aatcaactgaaagatacaattgaggtggatgaacctgaagagactggagatccattgact
gctgaggaactggaagaaaaagaacggcttttggaagagggattttcctcgtggagtaga
agagacttcaatacctttattagggcttgcgagaaatatggtcggaatgacataagaagt
attgctactgaaatggaagggaaaacagaggaggaagttgaaagatatgctaaagttttc
aaagagcgatacaaagagttaaatgattatgataggatcattaagaacattgaaagaggg
gaggccagaatttctcgtaaagatgagatcatgaaagcaatagggaagaagctggatcgc
tacaagaatccttggcttgaattgaagatccagtatggtcagaacaaagggaagttgtac
aatgaagaatgcgatcgtttcatgatatgcatggttcacaagcttggatatgggaactgg
gatgagctgaaagcagcattccgtacatcggctttgtttcgttttgattggtttgtaaag
tctcgtacaactcaagaacttgcaaggagatgtgataccttaattcggttggtggagaag
gaaaaccaagaatatgatgagagggagagacaggctcgtaaagaaaagaagcttgccaag
cagagcatgaccccgtccaagcgttccatgggaagacagaccgacagccctccttcccta
aagaagcggaaacagttatcaatggatgattacccaaacatgggaaaaaggaagaagtga
DBGET
integrated database retrieval system
