Populus trichocarpa (black cottonwood): 7457504
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Entry
7457504 CDS
T01077
Name
(RefSeq) probable CoA ligase CCL6 isoform X2
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00061
Fatty acid biosynthesis
pop00071
Fatty acid degradation
pop01100
Metabolic pathways
pop01212
Fatty acid metabolism
pop04146
Peroxisome
Module
pop_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
7457504
00071 Fatty acid degradation
7457504
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
7457504
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
pop01004
]
7457504
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7457504
Enzymes [BR:
pop01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
7457504
Lipid biosynthesis proteins [BR:
pop01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
7457504
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of breast milk
7457504
Exosomal proteins of breast cancer cells
7457504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
7457504
NCBI-ProteinID:
XP_002313075
UniProt:
B9HRT8
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Position
9:complement(9457527..9463004)
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AA seq
658 aa
AA seq
DB search
MEFIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKML
GRRQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEAC
DSQAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGK
ISDMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTN
GALVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVR
YLMEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQ
EKAAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTESCG
GCFTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGYHKR
EDLTNEVLVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENVYLRCPHI
TSIWVYGNSFESFLVAVVVPDRQALEDWAANHNETDDFKSLCKNLKARKYILDELNSIGK
TNNLRGFEMLKAVHLEPHPFDMERDLITPTFKLKRPQLLKCYKDCIDQLYSDAKGLKA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcgtaaaagttgaagaatcaagacctgcaagtgatggaaaaccatcagca
gggcctgtttacaggtccatttatgccaaagatggcctcatggatttgcctgcaggacta
gagtctccttggcagttctttagtgattctgctctcaagaaccctgaaaacaaaatgcta
ggtaggcggcaagtcattgattccaaggtgggtccttatgtgtggctgacatacaaagag
gtttatgattctgccatgaggatgggttccgcaatgaggaggcgcggtgtcaatcctgga
gaccgttgcggtatatatggttccaactgcccagaatggatcactgctatggaggcttgc
gacagccaggccataacatatgtaccactctatgacactcttgggcctaatgctgtggag
ttcatcatcaatcatgctgaagtttcaatagcctttgtccaagagaacaagctctcttct
attctatcttgccttccaaagtgctcttcaaatttaaaaactattgtcagctttggaaaa
atttctgacatgcaaaagaaggaagctgatgaactaggggtatcttgcttttcatgggaa
gaatttcctcagttggggagtttggattgtgaattacctccaaaacataagactgatgtc
tgcacaataatgtacactagtggaacaacaggagaaccaaaaggtgtcatcctaaccaac
ggggctcttgtggcagaagtattgtctgtggaccagctactttttctgacagacagagtg
gctgcagaagaagattcatacttctctttcctacccttggcccatgtatatgatcaagta
attgagacctattgcatctacaaaggtgcctcaataggattttggcaaggggatgtaaga
tacttgatggaggacatccaagaactgaagccaagtatattttgtggggttcctagagtt
tatgaccgcatatatactggaacacttgctaaggtttcagctggaggtggattaaagaag
aagttatttgattttgcctataactacaagttgggttatctagagaagggatttccacaa
gagaaagcagcacccctcctggacaggcttgtcttcgataagacaaagcaagcactaggg
gggagagtacgtatcttgttatctggtgctgctcctttgcctaagcatgtagaggagttt
ttgagggtcacatcctgttctactttatcacagggatatggtctcactgaaagttgtggg
ggctgtttcacatccataggcaatgtgtatcccatggtgggaactgttggagtgcccatg
acaaccattgaatcaagactcgagtctgtgccagagatgggatatgatgcattatccagt
gttccaaggggagagatttgcctgaggggaagtacattgttctctggttaccacaagcga
gaagatctaactaatgaagtcctcgttgatggatggtttcatacaggtgacattggagaa
tggcaacccaatggagcaatgaagattattgacaggaaaaagaacatatttaagctatct
caaggtgaatacgttgctgtagagaaccttgaaaatgtctacctgcgatgccctcatata
acatcgatttgggtctatggaaacagtttcgaatcatttcttgttgctgtagttgtccct
gacagacaggcacttgaggattgggctgcaaaccataacgagactgatgattttaaatcg
ttatgcaaaaatctgaaggcaaggaaatatatactcgatgagctcaatagcattggtaaa
acaaacaaccttagaggatttgaaatgttaaaagctgttcatttggaaccacatccattt
gatatggagagggacctgataactccaacattcaagctcaagaggccacaattactcaaa
tgttacaaggactgcattgatcaactgtacagtgacgcaaagggcttgaaggcatga
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