Populus trichocarpa (black cottonwood): 7463320
Entry
7463320 CDS
T01077
Definition
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03030
DNA replication
pop03410
Base excision repair
pop03420
Nucleotide excision repair
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
7463320
03410 Base excision repair
7463320
03420 Nucleotide excision repair
7463320
03430 Mismatch repair
7463320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pop03032
]
7463320
03400 DNA repair and recombination proteins [BR:
pop03400
]
7463320
Enzymes [BR:
pop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
7463320
6.5.1.6 DNA ligase (ATP or NAD+)
7463320
6.5.1.7 DNA ligase (ATP, ADP or GTP)
7463320
DNA replication proteins [BR:
pop03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
7463320
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
7463320
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
7463320
NER (nucleotide excision repair)
Other NER factors
7463320
MMR (mismatch exicision repair)
Other MMR factors
7463320
SSDB
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Other DBs
NCBI-GeneID:
7463320
NCBI-ProteinID:
XP_024464752
LinkDB
Position
9
AA seq
800 aa
MLRLRPCVSIRSIYSTRHSKLLPPLIPSLFFSKSPSFLKTHTLSLNPNSTMSSSRPSAFD
ALMSNARAAASAKKKTQPQPQLKPSSPKKRKTLDHPQNPDKTLNSVQNPQTDESKKLINT
PDSSNEPKSEPNSRSDSLLKVNESNKLRVEDKNTELKSKIVLLKKKAGDFKPEMVANWEK
GERVPFIFVSLAFDLIANETGRIVITDIVCNMLRTVMDTTPEDLVAVVYLLANKVAPAHE
GVELGIGEALIIKALAEACGRKEKEVKKQYKDLGDLGLVAKASRSSQSMMRKPDPLTITK
VFNTFQQIAKESGKDSQDKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAAL
GQAAVYTEEHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVPALLSDGVWNLPKTCSFT
PGVPVGPMLAKPTKGVSEIVTKFQDMEFSCEYKYDGERAQIHYLENGSVEIYSRNSERNT
GKFPDVVAVISRLKRPSASSFILDCELVAYDREKKKILPFQILSTRARKNVVMSDIKVNV
CIYAFDMLYLNDQPLIQKELKVRREHLYSSFEEEPGFFQFATAITSNDLEEIQKFLDTAV
DASCEGLIIKTMNKDATYEPSRRSHNWLKLKKDYMESIGDSLDLVPIGAFHGRGKRTGVY
GAFLLACYNSNNEEFQSICKIGTGFSEQVLEERSASLRSQVIPKPKSYYRFGDTIKPDVW
FEPKEVWEVKAADLTISPVHRAAIGEVDPNKGISLRFPRLVRVREDKSPEQASSSEQVAE
MYNAQKHNHQNNQDDNDDDD
NT seq
2403 nt
+upstream
nt +downstream
nt
atgctcaggctccgtccatgcgtctctatacgctccatttactccacgcgccactccaag
cttctccctcctctcattccctctctcttcttctctaaatccccatcatttctaaaaacc
cacactctctctctaaaccctaattccacaatgtcctcctctcgcccctccgccttcgat
gctctcatgtccaacgcacgtgccgccgcctccgctaagaaaaaaacccaaccccaaccc
caattaaaacccagctcccccaaaaaacgcaaaaccctagaccatcctcaaaaccctgat
aaaaccctcaattccgtacaaaatccccaaactgatgaatctaaaaagctaattaacact
ccagattcatcgaatgagcctaaatcagaaccaaattctaggtctgatagcttattaaaa
gtcaatgaatcgaataaactgagagttgaggataaaaatacggagttgaagagcaagatt
gtgttgttaaagaagaaagctggggattttaagccggagatggtggctaattgggagaaa
ggagagagggttccgtttatatttgtttctttggcttttgatttgatagcgaacgagaca
gggaggattgtgattactgatattgtttgtaatatgttgaggactgtaatggatactact
ccggaggatttggtggctgtggtttatttgttagctaataaggttgcccctgcgcatgag
ggagtggaacttgggattggggaagctttgattattaaggcgctggcggaggcgtgtggg
aggaaagagaaggaggttaagaagcagtataaggacttgggagatttgggccttgttgca
aaagcaagtcggtcatcccaatctatgatgcgcaagcctgatccattaacaattactaaa
gttttcaacacatttcaacagattgctaaggaatccgggaaggatagtcaagacaagaaa
aagaaccatatcaaggcacttcttgttgcagccacagactgcgagcctctgtatctaatt
cgtctgcttcagacaaagttgagaattggattggcagaacagactcttttggctgccctg
ggacaagctgctgtatatactgaagagcattctactcctcctccacacattcagtctcct
ttagaagaggctgcaaagattgttaaacaagtttactctgtgcttcctgtctatgataaa
atagtccctgctcttcttagtgatggcgtatggaatcttcccaagacatgcagcttcaca
cctggtgttccagttggacctatgctggcaaaaccaaccaaaggggtttctgagatagta
actaaatttcaggatatggaattctcctgtgaatacaagtatgatggagaacgtgcccag
atacattacttggagaatggttcggttgagatatatagtcgaaattctgagcgaaatact
ggaaaatttcctgatgttgttgctgtaatttcccgattaaagaggccctcagcaagctca
tttattctggattgtgaactagttgcgtatgatagagaaaaaaagaaaattctccccttt
cagatcctcagcacccgggcccgaaaaaatgtggtgatgagtgatatcaaggttaatgtt
tgcatatatgcctttgacatgttgtatcttaatgaccaaccacttattcagaaagaactg
aaagttcgtagagagcatctttacagttcattcgaggaagaacctggattttttcagttt
gcaactgcaataacatcaaatgatcttgaagagatacaaaaattcctcgacactgctgtt
gatgccagttgtgagggtttaatcatcaaaacaatgaataaggatgctacatatgaacct
tcaaggcgatcacataactggctgaaattgaagaaagattatatggaaagtattggagac
tcactagatctagtgcctattggtgctttccatggtcgtggaaaacgtacaggtgtctat
ggtgcttttctccttgcttgttataatagcaacaacgaagaattccagagcatatgtaaa
ataggcactggattttctgaacaagtgcttgaggaacgttctgctagtctccgttcacaa
gtgattcccaaaccaaagtcatactatagatttggagatactattaaaccagatgtgtgg
tttgaacccaaggaggtgtgggaggtgaaagcagcagacttgactattagccctgttcat
cgtgctgcaattggtgaagttgatcctaacaagggaatttcactaagatttccacgtctt
gttcgagttcgagaagacaagtctccagagcaagcctcatcatcagagcaggttgctgag
atgtataatgcccaaaagcataatcatcaaaacaatcaagatgacaatgatgatgatgat
tga
DBGET
integrated database retrieval system
