Populus trichocarpa (black cottonwood): 7470216
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Entry
7470216 CDS
T01077
Name
(RefSeq) ubiquitin-like modifier-activating enzyme atg7
KO
K08337
ubiquitin-like modifier-activating enzyme ATG7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
7470216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7470216
04121 Ubiquitin system [BR:
pop04121
]
7470216
03029 Mitochondrial biogenesis [BR:
pop03029
]
7470216
Membrane trafficking [BR:
pop04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
7470216
Atg8 conjugation proteins
7470216
Ubiquitin system [BR:
pop04121
]
Ubiquitin-activating enzymes (E1)
UBL-activating enzymes
7470216
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
7470216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG7_N
ThiF
Shikimate_DH
2-Hacid_dh_C
Pyr_redox_2
Motif
Other DBs
NCBI-GeneID:
7470216
NCBI-ProteinID:
XP_002305077
LinkDB
All DBs
Position
4:complement(4559545..4564295)
Genome browser
AA seq
715 aa
AA seq
DB search
MAQEEKSRSGCGSSSSTILQFVPFNSLADEGFWHRLSSLKLNKYGIDDSPIPITGFYAPC
SHSQVSNHLRLLAESLPTDENDQSSMPAISRGNRNRCPVPGTLYNTNTLEAFHALDKKSL
LKEEANKIWEDIHNGRAVEDSAVLSRFLLISFADLKKWSFHYWFAFPALVLDPPATLVES
KRASEWFTSEEVKSVSVACNDWRNSSLTADVPFFFISIASNSHATIRHLKDWEACQADNQ
KVLFGFYDPCHEKDPGWPLRNFLALISSRWNLKSVHFLCFRESRGFMDMESSLVIEALIT
APQGLNDRQLVPNAVGWEKNKNKYVYRCINLATSMDPTRLAVSAADLNLKLMRWRALPSL
NLDELSSVKCLLIGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLD
GGDFKALAAAKSLKRIFPAVEAKGEVMAIPMPGHPVTNQEEKSVVDDCSRLYDLVDSHDA
VFLLTDTRESRWLPTLLCASANKITITAALGFDSFLVMRHGPGPFSSVHANTSSVDMENL
AQTDKGGKRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASSLAVELFVSILHHP
DGMFAEGDITNSTSSSGGSEPPLGILPHQIRGSLFHFSQMTLVGHSSNSCTACCSTVVSE
YRKKGIEFLLQAINHPTYLEDLTGLTELKESANSFKLDWDDETDDFDDDDDCVEI
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagaggaaaagagtaggagtggatgtggatcttcatcttctactatcctccaa
ttcgtaccctttaatagcttagctgacgaaggtttctggcatagattgtcttctttgaag
ctcaacaaatatggcatcgatgattctcctatacccatcaccgggttttatgcgccttgc
tcacattctcaagtatccaatcacctgagacttctcgctgaatctttgccgactgatgaa
aatgaccagtcttcaatgccagcaattagtcgcggtaacaggaacagatgccctgtaccc
gggactctttacaatacaaatacattggaggccttccatgccctggataaaaagagcttg
ctaaaggaggaagcaaacaagatttgggaagacattcataatgggagagcagtggaggac
agtgcggtgctttcaaggttccttcttatatccttcgcagacctaaaaaaatggagcttt
cattactggtttgctttccctgccttggtgcttgatcctcctgcgacattggttgaatca
aagcgtgcttcagaatggttcacctcagaagaggtaaaatccgtatctgtggcttgtaat
gactggcgtaactcaagcttaaccgcagatgttccattcttttttatcagtattgcttcc
aattcccatgctactatcaggcatttaaaggattgggaagcctgccaggctgataatcaa
aaggtgctatttggtttttatgacccatgtcatgaaaaagatcctggttggcctcttcgc
aacttcctagcactgatttcttcaagatggaatctgaagagtgtccactttttatgcttc
agagagagtcgtggttttatggatatggagtcttcccttgtcattgaagccttaataaca
gctccacaaggattgaatgatcgtcaacttgtacctaatgcagttggatgggaaaaaaac
aaaaataaatacgtatacagatgtattaaccttgctacatccatggacccaactaggttg
gccgtatctgctgcagatttgaatttaaaactaatgagatggcgtgccttgccatccctt
aacttagatgagttatcttctgtgaagtgtcttctcataggagcaggcacgcttggatgc
caggttgctcgcatgcttatggcttggggtgtccgaaaaattacactacttgacaatgga
agagtggctatgtctaatccattgaggcagtccctgtacacattggatgactgcctcgat
ggaggtgattttaaagccttggcagccgctaaaagcttgaagcgtatttttccagctgtg
gaagcaaagggtgaagtgatggctataccaatgcctggtcatccagtgactaaccaagaa
gagaagagtgtggttgatgattgtagccgtctgtatgatctggttgattcccatgatgca
gttttcttgttgactgatacaagagagagccgatggctcccaacccttctatgtgcaagt
gctaacaagattactataactgcagctcttgggtttgatagcttcttggtaatgcggcat
ggccctggtccttttagctctgttcatgctaacacttcatctgttgatatggaaaacctt
gctcaaactgacaaaggagggaagagactgggctgttacttctgcaatgatgtggttgca
cctacagattcaactgccaatcgaactttagaccaacagtgcactgttacacgtccaggg
cttgctcctattgcttcatctcttgctgtagagctttttgtcagcatcttgcatcatcct
gatgggatgtttgctgaaggtgatatcacaaactccactagtagcagtggtggcagtgag
ccacctcttggtatattgccccaccagattcggggttctctctttcatttttcgcaaatg
acccttgtaggccactcctctaatagttgcactgcttgttgcagcactgttgtatcagaa
tatcggaaaaaaggaatcgaattcctgcttcaagcaattaatcatcctacttatttggag
gatctcaccggactcacagaattgaaggagtcggctaactcatttaaattggactgggat
gatgagacagatgacttcgatgatgatgatgattgtgttgaaatataa
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integrated database retrieval system
