Porphyrobacter sp. LM 6: BG023_111961
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Entry
BG023_111961 CDS
T04468
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
porl
Porphyrobacter sp. LM 6
Pathway
porl02024
Quorum sensing
porl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BG023_111961
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
BG023_111961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porl03019
]
BG023_111961
03036 Chromosome and associated proteins [BR:
porl03036
]
BG023_111961
Messenger RNA biogenesis [BR:
porl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
BG023_111961
Chromosome and associated proteins [BR:
porl03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
BG023_111961
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Polysacc_deac_1
Motif
Other DBs
NCBI-ProteinID:
AOL94878
UniProt:
A0A1D7NMA7
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All DBs
Position
complement(2016014..2016595)
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AA seq
193 aa
AA seq
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MSNGRTLSPRPVSRPAAPSEPRGGASGGGATRQANLQDAFLNLLRKNKIPVTMFLVKGVK
LQGIVTWFDNFSILLRRDGQSQLVYKHAISTIMPAQSLDPTVFGVPGGRKQKMLQDVFLS
RVAEAEVQVTMFLVNGVMLQGRIAAYDLFCMLLERDGAVQLAYKHAVSTIQPAGPVDLSV
DDDDDGDDDGADD
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacggccgaacgctctctcctcgtccggtttcccgtccagcagcgccgagcgag
cctcggggcggtgccagcggtggcggtgccacgcgccaggccaatcttcaggacgccttc
ctcaatctgctgcgcaagaacaagatcccggtgaccatgttcctggtcaagggcgttaag
ttgcaggggatcgtcacctggttcgacaatttctcgatcctgctacggcgcgatggccaa
tcgcagctggtctacaagcacgcgatcagcacgatcatgcccgcgcaatcgctcgacccg
acggtgtttggcgttccgggcggtcgcaagcagaagatgctccaggacgtgttcctcagc
cgcgtggccgaagccgaagtgcaggtgacgatgttcctcgtgaacggcgtcatgctccag
ggccggatcgccgcctatgacctgttctgtatgctgctcgagcgcgatggcgcggtgcag
ctcgcttacaagcacgccgtctcgaccatccagcccgccgggccggttgatctcagcgtc
gatgatgacgacgacggtgatgatgacggggcagacgactga
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