Paralichthys olivaceus (Japanese flounder): 109628966
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Entry
109628966 CDS
T06037
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109628966 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pov03021
]
109628966 (smarcc2)
03036 Chromosome and associated proteins [BR:
pov03036
]
109628966 (smarcc2)
Transcription machinery [BR:
pov03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109628966 (smarcc2)
Chromosome and associated proteins [BR:
pov03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
109628966 (smarcc2)
PBAF complex
109628966 (smarcc2)
GBAF(ncBAF) complex
109628966 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
109628966
NCBI-ProteinID:
XP_019941988
LinkDB
All DBs
Position
Unknown
AA seq
1040 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDIDEASPVPASEEGNPAKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPSIKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQPMMSFPDKVKDKPADLQNFGLRTDMYSKKSSSAKSKSTVSSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSTLGPLAFQPV
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPEESTDENKNDTQSSEEKREAKDSKDGAIEEEEK
QAENGKKEEERGREPEGEREADKTESDMGDGEKEKEGKEGTEEGQREGESEIERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQAGGPHSSQPA
AGLQPQALAASQQAPSTPAPQPAASPAPPTSSAPAPESQPPQGAHTSPPCPPSQAPASHS
SSSTTPVLHGEYSLTVPTPF
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgacacc
gtctctcagtttgataatgtccgcgtctggctggggaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtccctgtccagcctggtggtccagctgctccagttccag
gaggaggtgttcggtcgacatgtcagcaaccctccactcaccaaactgcctatgaagtgt
ttcctggacttcaagtcagggggggctctctgccacatcctggctgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcaaggatggaccggaat
gtggagatgttcatgaccattgagaagtcgttggtgcagaacaactgcctgactcgacct
gtcatctacctgagctcggacattgaaccaaaactgctcgggaaactgaaagacatcatc
aaaagacatcagggctcggtaactgaggacaaggcctccagctcccatgttgttgtgcct
attcctaccagtctggaggaagaggaatgggtgcgtcctgtgatgaagagagataaacaa
gtgctgcttcactggggatattttcctgacagttacgacacctggatcccagccagtgag
attgaggctgcggtggaagatcctccgagcccagagaaacccaggaaggtccatgccaag
tggattttagacctggaccagtataacgaatggatgaatgaagaagactatgaagtgggc
gagggctgcccaaagaggaagaggatctctgccaagaccctgacggatgaggtgaccaca
cccgacgagcggcgggacaagaagcccggcagtgccaagaagaggaagcgctcgccgtcg
ccctcccccacccctccacctcaggagagcaagaagaagaacaccaagaaaggaccaaca
accccgtacaccaagtctaaacgtggccagagggaggaagaacaggaagacttgagtaag
gacatagatgaagcatcacctgttccagcatccgaagagggaaacccagctaagacaaat
aacactaagaaagattcggattcaactccagtcaagggaggaacggatatggacgagcaa
gaggatgagtccatggaaacaacagggaaggaagaggaggaaggctccccgagtatcaag
ggtgaaccagtgaaaggctcggaccttcatgaggacaacgtgactgagcaaacccaccac
atcatcatcccgagctatgctgcctggtttgactacaacagtgttcacgccatcgagcgc
agagccctgccagagtttttcaacggaaagaacaaatccaaaacccctgagatttatctg
gcgtacaggaacttcatgatcgacacctatcgactgaatcctcaggagtacctcacctcc
accgcctgccgcaggaacctggcaggagatgtttgtgcaatcatgagagttcacgccttc
ctggagcaatggggtctgatcaactaccaggtggactcagagagccggcccacacccatg
ggtcctccacccacctctcacttccatgtcctggcagacacaccatccagtctggttccc
ctgcagcccaagacatcccagactcctgctacccagccaatgatgtcattcccagataaa
gtgaaagataaaccagcagatctgcaaaactttgggctgcggactgacatgtacagcaag
aagagcagctctgcaaagagcaagagtacagtaagctccatgagggagtggacagagcaa
gaaacactactactacttgagggtttggaaatgtacaaggacgactggaacaaagtgtca
gaacacgttggcagccgtacacaggatgagtgtatcctgcactttctgcggttgcccatt
gaagacccctacttggaggacagctcctcgactctgggaccactcgcctttcagccggta
cctttcagccaggcgggaaaccctgtcatgagcacagtggccttcctcgcctctgtcgtc
gacccacgcgtggcctcggctgcagctaaatctgctctggaggagttttctcgtatgaaa
gaggaagttcctgcagctctggtcgaagctcacgtgcgacgagtggaggaggcagcgaga
gtcagtggccgccaggaccccctgtatggcctggagggaagtgggattgcaggaactggc
ctggaggagggagaaagacctgaggaaagcactgatgaaaacaagaatgacacccaatca
agtgaagagaagagagaggccaaggacagcaaagatggagccattgaagaagaggaaaaa
caggcagaaaatgggaagaaggaagaagagagaggaagagaacctgaaggagagagggag
gcagacaaaacagagtcagatatgggtgatggggagaaggagaaggagggaaaagaggga
acagaggaaggacaaagagaaggagagagtgagattgagaggaaggccaaggtagagcgt
gatgttggagaggggaacctggccacagctgctgcatctgctcttgctgcagctgctgtt
aaagccaagcacctggctgcagtggaggagaggaagatcaaatctctcgtggctctgttg
gtggaaactcagatgaagaagctggagataaaactgcgacactttgaagaactggaaacc
atcatggacagagagagggaggctctggagtaccagcggcagcagctgctggccgaccgt
cagtctttccacatggagcagttgaaatacgctgagatgagagctcgtcagcagcacttc
cagcagattcagcaccagcagcacagccaggccgggggccctcattccagccagccggca
gcaggcctgcagcctcaggccctggcagcaagtcagcaagctcccagcacaccagcaccg
cagccggccgccagccccgcccctccaacctcttctgccccggctccagagtcccaacct
cctcagggtgctcacacctcgcccccatgtcccccaagccaggccccggcttcccactcc
agctccagcactacacctgtacttcatggtgagtacagcctcactgtcccgacaccgttc
taa
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