Paralichthys olivaceus (Japanese flounder): 109639566
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Entry
109639566 CDS
T06037
Name
(RefSeq) collagen alpha-1(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Pathway
pov04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109639566
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pov00536
]
109639566
Glycosaminoglycan binding proteins [BR:
pov00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109639566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
109639566
NCBI-ProteinID:
XP_019958645
LinkDB
All DBs
Position
Unknown
AA seq
1727 aa
AA seq
DB search
MDPWSPVRETWLLLLLLVAVFHTSTAANPIDVLKVLELSEDMEGVSLEAGLCTSRTGREE
TDLSFKIDKKIQLSAPTNQLFPDSPFPMNFSVMTTVKAARGSQVFLLSLYDSQGTQQLGV
EVGRSPVFLYEDHEGQPPPELYPTFRKINLADGKWHRVAYSVEGQSVTLYLDCEKLETLD
LLRGHDPHVSTEGVTVFGTRLLDEDVFEGDIQQLLIVDDPRAAETYCQDYIPDCDAPLPY
DSILTEAEEVERAPKKHVVEEFEEFDYSDLYDDVSTSTVAVGPNVTEYEIVEYEDYDNTT
DYYQVNEYEDEYDDRYGPAQTEREFSLNAQDLPEKGQKGEPGILGLGTQITGPYGPPGPE
GEVGSSGITGPVGPRGDPGELGPPGRPGLNGADGIPGPPGNIMLIPFQSGGGPKLGAVVS
AQEAQAQAILQQTKLAMKGPPGPLGLRGRPGPLGSPGSSGLKGANGEMGPPGPPGMPGIP
GQNGRLGKRGRSGTDGGRGAIGESGAKGDRGFDGLPGLPGNKGHKGDRGKPGPLGPSGEP
GEKGSEGPAGPRGQPGDAGIRGIDGVQGSKGNIGAPGDTGAPGQQGNPGIVGFPGPQGLV
GLPGDKGPQGKKGMQGLPGNDGPPGHPGREGTPGEKGLSGPLGVQGPVGYPGQRGVKGAD
GVRGLKGSKGEKGEDGFSGAKGEMGVKGDTGDNGGTGGRGEDGPEGPKGQMGPLGESGPS
GTPGEKGKLGVPGLPGYPGRQGPKGSDGFPGSLGAAGEKGKKGPAGQAGGGGQRGPNGAR
GARGARGPTGKSGEKGASGHDGPPGSPGERGPQGPQGRNGEPGPKGSSGPGGKDGLPGHP
GQRGEPGFQGKTGPPGPSGVVGPQGKSGESGPTGDRGHPGAPGVPGEHGLPGAAGKEGGK
GDPGLPGTSGKSGPAGLKGFRGSRGAPGIMGPPGLKGGSGPNGLQGNIGSTGERGPPGTA
GAIGQPGRAGTIGGPGPMGEKGEPGEKGPIGPAGQDGDQGTVGMPGATGPTGPPGDDGDK
GEQGGPGQKGSKGDKGEAGPSGPTGTQGPIGQPGLPGMDGLPGPRGQQGMYGPKGDEGLR
GFKGSRGPIGLQGMPGLPGEKGESGHGGLMGPPGQHGPTGPQGPIGGQGPNGRLGMIGQP
GVVGEKGEDGEAGDPGPVGVSGKLGDKGDQGEKGDTGLPGAAGPPGARGPSGEDGAKGNS
GAIGLTGDLGQQGEAGPNGVDGLPGSKGDTGDPGKSGPPGAPGEPGPSGPPGRRGHLGKA
GKEGKAGLKGVKGDPGFEGPIGKTGPVGAQGHPGRSGPQGLRGIPGPAGEQGLNGPPGQT
GPPGPMGPPGLPGLKGDPGKKGDKGHGGLIGLIGPPGDIGEKGDRGLPGNQGLPGPKGDE
GPVGPSGPHGPPGPTGLSGAMGLKGSKGNQGPIGPRGDTGFAGPPGPPGRPAAVAGMAPL
QERGRRRRTHTSVDGAALEQEEEEAVDGVIDGGEEEWMQGDQAVQENWMKQKEGQGMEEV
FASLSSMKVEMEGLRNPHGTFHSPARTCKELWLLHPELPNGEYWIDPNQGCHRDSFKVFC
NFTAQGETCLHPDKKFQSVKLAAWKGETPGTWYSKFRKGKQFSYSGTDGVPIHIVQLNFL
KLLSATAKQTFTYHCLNSAAWLHTATYGHEHALRFRGSDGEEMTHENTHYISALYDGCQT
RSGQERTVLEFDAPLSTTLPITDVAVSDFGNGNQKFGFQVGPVCFDG
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggatccatggagtccagtgcgtgagacatggctgctgctgctgctgcttgtcgcggtg
tttcacacatcaacagcagccaatcctatcgatgtcctgaaggtcctggagctgtcggag
gacatggagggagtgtcgctggaggccggtctgtgcaccagcaggacaggcagagaagag
actgacctctcctttaaaatcgacaagaagattcaactgagcgcacccaccaaccaactc
ttccctgattctccgttccctatgaatttctctgtgatgacaacagtaaaagcagcgaga
ggctcccaggtctttctcctctccctgtacgactcgcagggcacacagcagctgggtgtc
gaggttggtcgttctcctgtcttcctgtatgaggaccacgagggtcagccacctccggaa
ctttaccccaccttcagaaagatcaacctggctgatggcaagtggcacagagtagcctac
agtgtggagggccagtctgtgactctctacctggactgtgaaaagctggaaacgctggac
ctgctcagaggtcacgacccccatgtcagcaccgagggagttaccgtgtttggaactagg
ttgctggacgaagacgtgtttgaaggggacatccagcagctgctcatcgtcgatgacccc
agagcagcggagacgtactgtcaggactacatcccagactgtgacgcacctttgccctac
gacagcattttaacagaggctgaggaggtggagagagcgccgaagaaacatgtggtggaa
gagtttgaggagtttgactacagcgacctctacgacgacgtctccacctccacggtggct
gtcggtcctaatgtcacagagtacgagattgtagagtacgaggactacgacaacactaca
gattactaccaagtgaacgagtacgaggacgaatatgacgaccgttatggaccagctcag
acagagcgggagttttctctcaacgcacaggatttaccagagaagggacagaaaggagaa
ccaggcattttggggctgggaacgcagataacaggaccatatgggcctccaggacctgag
ggagaggtagggtcttctggaatcacaggaccagttggacctcgaggagaccctggagag
ctgggccccccagggcggccaggcctgaatggagctgatgggatcccaggtcccccaggc
aacatcatgctcataccgttccagtcaggtggcggtccaaagttgggtgctgtggtttct
gcacaggaggcgcaggcccaggccatcctgcagcagaccaagctggctatgaagggacct
ccaggaccactcggtctcaggggacgacctggaccactgggttcaccaggttcctctggg
ctgaagggggccaatggagagatggggcccccgggtcccccaggaatgccaggtatccca
ggtcagaacggacgacttgggaaaaggggtcgctcaggtacagatggaggccgtggtgca
ataggagaatctggagcaaagggtgatcgagggtttgatggcctgcctggtctccccgga
aacaaaggtcataaaggggacagaggtaaaccaggtcctttaggtccttcaggagagcca
ggagaaaagggctccgaggggccggctgggccgagaggacagccaggtgatgctggcatt
cgaggtattgatggcgttcaaggctcgaagggaaacataggagcaccgggagacactgga
gcgcctggacaacaaggcaaccctggaatagtgggcttccctggtcctcaggggttagta
gggctgccaggagacaaggggcctcaaggaaagaaagggatgcagggcttacctggaaac
gatgggcccccaggtcatccaggaagagaaggcactccaggtgaaaaaggcctgtcgggt
cctctgggagtacaggggcctgttggatatcctggacaacgaggagttaagggagcagat
ggagtcagaggattaaagggaagcaaaggcgagaagggagaggacggtttctcaggggcc
aagggggagatgggggtgaagggtgacacaggagacaatggaggtacaggtgggagagga
gaagatggacctgagggacccaaaggtcagatgggtcctctaggagaatccggcccatct
ggtactcctggagagaagggaaaactgggagttccagggctgccagggtatccaggacgt
caggggccaaagggttctgatggtttccctggttcactgggagctgcaggagagaaaggg
aaaaaaggtcccgcaggacaagctggaggtggaggccagaggggtccaaatggtgcacga
ggtgccagaggagcacgagggccgacggggaaatcaggagagaagggcgcctcaggacat
gatggacccccaggatctcctggagagaggggacctcaaggaccgcaaggaaggaacgga
gagccaggacctaaaggatcaagtggtccaggtgggaaggatggacttccaggtcaccca
ggtcaaagaggagaaccaggattccaagggaagacgggacctcctggaccttcaggtgtt
gtggggccacagggcaaatcaggagaatccggcccaacaggagaccgcggtcacccaggg
gcaccaggggtacctggagagcatggtttacctggggctgctgggaaggaaggtggaaag
ggtgacccaggtttaccagggacatctgggaagagcggtcctgcaggactgaaaggattc
agggggagccgaggagcacctggaattatggggcctcctggtctgaaaggaggatcagga
cctaacggactccagggaaacataggttccacaggcgagaggggccctccaggaacagct
ggtgccatcggacagcctggtcgggccggaactattggaggacccggaccaatgggagag
aagggcgagcctggagagaaaggacctattggaccagcaggtcaggatggagaccaggga
actgtcggaatgcctggagctacaggtcctactggacctccaggagatgatggagataag
ggagagcagggaggccccgggcagaaaggcagcaaaggagacaaaggagaagcaggcccc
tcaggtcccactggcactcaagggcctattggtcagccaggactcccgggtatggatgga
ctgccaggtccccggggccagcagggcatgtatggtccgaaaggagacgagggactacgt
ggctttaagggctctagaggaccaataggattacagggcatgccgggcctgccaggagaa
aagggtgagagtggacatgggggactaatgggtccacctgggcaacacggccccactggt
cctcaaggacctattgggggtcagggtccaaacgggcgactaggaatgataggacagccg
ggtgttgttggagagaagggggaggatggagaggctggtgaccccggaccagtcggtgtt
tcaggaaagctaggagataaaggagaccagggggagaagggagatacaggccttccagga
gcagctggtcctccaggagccaggggcccttcaggggaggatggggccaagggcaattct
ggagccataggcctcacaggtgaccttggacaacagggagaagctggacccaatggtgtg
gatggtctgcctgggtctaaaggagacacaggggatcctggaaaatctggaccaccagga
gcaccaggggaacctggaccatctggacctcctggacgaaggggccacttggggaaagca
gggaaggaaggaaaggcaggcctgaaaggagtgaagggtgaccccggttttgagggacca
atagggaaaacagggcctgtaggagcccaggggcatcctggcaggtctggccctcagggt
ctaaggggaattcccggccctgcaggtgagcagggtttaaatggaccccctggccagaca
ggaccaccaggtcccatgggtccaccaggattaccaggactaaagggagaccccggcaag
aagggagacaagggtcatggtggtttaatagggttgatagggccgccaggagacattgga
gagaagggggacagaggactgccaggaaaccaaggactaccaggtccaaaaggagatgag
ggtccagttggtccatctggtccccacggaccccctggccccacaggcctgtctggtgct
atgggtctaaagggctctaaaggaaaccagggtccaattggccccagaggagacactggt
tttgcagggcctccaggaccaccaggacggccggcagcagtggcaggaatggcccctctt
caagaacgaggcaggagaaggagaacccacacttcggtagatggtgctgcacttgaacag
gaggaggaagaggcggtggacggtgtaattgatggaggagaggaggaatggatgcagggc
gaccaggcggtgcaggaaaactggatgaagcagaaggagggccaaggcatggaggaagtg
tttgcatctctgtcctctatgaaagtggagatggagggtctgcgtaacccacacgggacg
ttccacagcccagcccgcacctgcaaggagctctggctcctccacccagagcttcctaac
ggcgagtactggatcgatcccaaccagggttgccatcgagactccttcaaagtgttttgt
aacttcactgcacagggtgagacgtgtctgcacccggacaagaagttccagtcggtgaag
ttagctgcctggaaaggggaaacgcccggcacatggtacagtaaattcaggaaaggaaaa
cagttttcttactcggggacagatggcgttcccattcacattgttcagctgaacttcctg
aagctgctgagcgccacagccaaacagaccttcacctaccactgcctcaactccgccgca
tggctgcacaccgccacctacggccacgaacatgcactgcgcttcagaggcagcgacggg
gaggagatgacacatgagaacacgcattacatcagtgcactatatgacggatgtcagaca
cgctcagggcaggagaggactgtgttggagtttgacgctccgctctccaccacgctcccc
atcactgacgtggctgtgtccgactttggaaacgggaaccagaaattcggtttccaagtc
ggcccggtctgcttcgacggttaa
DBGET
integrated database retrieval system
