Komagataella phaffii: PAS_chr1-4_0204
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Entry
PAS_chr1-4_0204 CDS
T01092
Name
(RefSeq) Component of the holoenzyme form of RNA polymerase transcription factor TFIIH
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr1-4_0204
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr1-4_0204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr1-4_0204
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr1-4_0204
Enzymes [BR:
ppa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAS_chr1-4_0204
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAS_chr1-4_0204
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAS_chr1-4_0204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-GeneID:
8197186
NCBI-ProteinID:
XP_002490318
UniProt:
C4QXR4
LinkDB
All DBs
Position
1:complement(1776374..1778836)
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AA seq
820 aa
AA seq
DB search
MSRRPAVNYLEDEFSSDSYSEEEFPKRRKKVNKKKAQSAMDEIKKQNKDTKFEEDELIEI
PLDRPSDFIPDSVSKVFGSSDFSYLKLKPDHASRPIWISPNDGRIILESFSPLSEQAQDF
LVTIAEPISRPSFIHEYRITAYSLYAAVSVGLETDDIISVLNRLSKVPVAPSIVNFIRSA
TISYGKVKLVLKNNRYHVESSQADILQMLLKDEVIGQLRVKSDTLTTTSDGLVRTNKPKS
DGLVIAGTAAPASDNSITNTFNTAIGSDPFEDKVEEDDEDEDDDIDKVHSFEIASESVEI
VKKRCQEIDYPVLEEYDFRNDQRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIV
LPCGAGKTLVGITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEM
FTGDAGLVVSTYSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTI
AAHAKLGLTATLVREDDKIGDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEF
YQEYLRETSRKRMLLYIMNPTKFQACQFLIHYHEQRGDKIIVFSDNVYALQEYALKLGKP
FIYGSTPQQERMNILQNFQYNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQ
RLGRILRAKRRNDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMESL
PNLAYSSARERRELLQDVLLKNEDAAGIEAGEDSENMIGGGVSKRVRSGGQSSSATRTTG
SLAGLAGGEDMAYVEYSRNKNKELKEHHPLIQKMYYKKKR
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggagaccagcagtcaactacttggaggatgaattctcttctgattcatacagt
gaggaagaatttccgaaaagaaggaaaaaggttaacaagaagaaagcccagtctgctatg
gatgagatcaagaaacagaacaaggacaccaaatttgaagaagatgagttgattgagatc
cccttggatagaccatcggattttatacctgattcagtctccaaagtatttggatcgtct
gatttttcctatttgaagctgaagcctgatcatgcctcaaggcctatatggatctctcca
aatgatggtaggatcatattagaaagtttctcacccttaagtgagcaagcacaggacttt
ttggtaaccattgctgagccgataagtcgtcccagctttattcatgagtatcgaattact
gcttattccctgtacgctgctgtctctgtggggctagaaaccgatgatatcatttcggtg
ctgaatcgtctatccaaagtacctgtggcaccttcgattgtgaattttattagatctgcc
accatttcatatggaaaggtcaagctagttctgaagaacaatagataccatgtagaaagt
tcgcaagcagatattctgcaaatgttactaaaggacgaggtgattggccaactacgagtt
aaatctgatacgttgacaactaccagcgatggattggtacgtacgaataagccaaaatct
gatggccttgtcattgcgggtacagctgctcctgcgagcgacaatagcatcaccaacact
ttcaacacagctataggaagtgacccgttcgaagataaagttgaagaggacgatgaggac
gaagatgatgatattgataaagttcattcgttcgaaattgcctcggaatccgttgaaatc
gtcaaaaagaggtgccaggaaattgattatccagtcttggaagagtatgatttcaggaat
gatcagcggaaccctgatttggacattgacttgaaaccatcgacgcaaatcagaccatat
caagaaaagtctttatctaaaatgttcggtaatggacgtgctagatcgggtatcatcgtt
cttccatgcggtgctggtaagaccttggttggcatcactgcagcttgtaccattaagaag
tctgttattgttctttgtacatcatcagtgtcagtaatgcaatggagacaacaattcttg
caatggtgcacgattcaaccagaaaatgttgctgttttcacatcagaaaacaaggagatg
tttactggtgatgctggtctggtcgtatctacttactctatggtcgctaacaccagaaat
agatctcacgactctcaaaaagttatggactttcttacttcgagggagtggggttttatc
attttagatgaggtccacgtcgtaccagctgcaatgttcagaagagtggtcacaactatt
gccgcccacgcaaaattaggcttgacagcaacattagttcgtgaagacgataaaattggt
gatcttaactttttaatcggaccaaagttatatgaggccaattggatggacttggctcag
aaaggtcacatagccaatgttcagtgcgccgaagtttggtgcccaatgacttctgaattt
tatcaagaatatctcagagaaacctcacgtaagaggatgttattgtatattatgaatccc
accaagtttcaggcatgccagtttcttattcattaccacgaacaacgaggtgataagatt
atcgttttttctgataacgtctacgccttgcaagagtatgcactaaagcttggtaaacca
tttatttatggatccaccccacagcaggaacgaatgaacatcttgcaaaactttcagtat
aatgatcaggtcaacacaattttcctttcaaaggtaggtgacacatctattgatttacca
gaggcaacatgtttaattcaaatttcttctcattatggttctagacgtcaagaagctcaa
cgtttgggtagaattttgagagctaaaagaagaaatgacgagggatttaatgcttttttc
tattcgttagtatctaaggacacacaggaaatgtattattccactaaaagacaggccttt
ttggtcgaccaaggttatgccttcaaagtcatcactcatcttcatggaatggagagcttg
ccgaacctggcatattcctccgctcgtgagcgtagagaattgttacaggatgttcttctg
aagaacgaggatgcagcaggaattgaagccggtgaagactctgagaacatgattggaggt
ggtgtcagcaagagagttcgctctggcggtcaatcttcctccgcaacgagaacgacagga
tcgttagctggtcttgctggtggtgaagacatggcctatgtcgaatacagcagaaacaaa
aacaaggaactaaaggagcaccaccctttaatccaaaagatgtactacaagaaaaagaga
tga
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