Komagataella phaffii: PAS_chr1-4_0523
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Entry
PAS_chr1-4_0523 CDS
T01092
Name
(RefSeq) Transcription/RNA-processing factor
KO
K15544
RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:
3.1.3.16
]
Organism
ppa
Komagataella phaffii
Pathway
ppa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PAS_chr1-4_0523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr1-4_0523
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr1-4_0523
Enzymes [BR:
ppa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
PAS_chr1-4_0523
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PAS_chr1-4_0523
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PAS_chr1-4_0523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssu72
Motif
Other DBs
NCBI-GeneID:
8197107
NCBI-ProteinID:
XP_002490655
UniProt:
C4QYQ1
LinkDB
All DBs
Position
1:2362233..2362928
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AA seq
231 aa
AA seq
DB search
MSELLSFCTVCASNQNRSMEAHKLLKDAGYKVRSYGTGSAVRLPGPSIDKPNVFQFGTPY
STMREQLMKQDVRLHQANGVLKMIDRNEKIKEAPQRWPYIGQEPQTTEGLDFDIVFTCEE
RCFDAVVEDFMNRSYNDTSSQINRKLIHVINVEIRDDYDNALIGGQGILDLAQQLEKKME
EANEFNQKPDQKDSTSIQKNYDLFEDSIPDILAAWQKDHPNLPLLYSVCYN
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcttctcagcttttgtacggtatgcgcgtccaatcaaaaccgttccatggag
gcacacaaattgttgaaagacgccggatacaaggttcgttcgtatgggacagggtcagcc
gttaggttgcctggtccatctatcgacaagcccaatgtgttccaatttggaaccccttac
agcacaatgagagaacaattgatgaaacaagacgttcgtctacatcaggcaaacggagtt
ttgaaaatgatcgatagaaatgaaaaaataaaagaggctcctcaacgatggccctatatc
ggtcaagaaccacaaacaacagaaggtctagactttgatattgtgtttacatgcgaagag
cggtgttttgatgctgtagtagaggatttcatgaacagatcttacaacgacactagctcc
caaattaacagaaagttgattcacgtaattaacgttgaaattagagatgattacgataat
gcattgattggaggtcaaggtatcctggacttggcccagcagttggaaaagaagatggaa
gaagctaacgaattcaaccagaagcctgaccagaaggacagcacaagtatacagaaaaat
tacgatttgtttgaggacagtattccggatatcctggcagcttggcaaaaagatcatcca
aatctccccttactgtacagtgtatgctacaattaa
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