Komagataella phaffii: PAS_chr2-1_0095
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Entry
PAS_chr2-1_0095 CDS
T01092
Name
(RefSeq) Nucleosome remodeling factor that functions in regulation of transcription elongation
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ppa
Komagataella phaffii
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr2-1_0095
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr2-1_0095
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
PAS_chr2-1_0095
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
PAS_chr2-1_0095
SLIK complex
PAS_chr2-1_0095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
CHD1-like_C
Cdh1_DBD_1
HDA2-3
CHDCT2
AAA_22
Motif
Other DBs
NCBI-GeneID:
8198084
NCBI-ProteinID:
XP_002490977
UniProt:
C4QZM3
LinkDB
All DBs
Position
2:complement(173188..177351)
Genome browser
AA seq
1387 aa
AA seq
DB search
MSRDLPDEVFENPELYGLRRSRRPHTAPITTSGEDDDQSNDKLEFDESFDESASEESDIE
FGVAKKRKVTPKAVSKEKRSAKTNGNLVEAAEVRFSTRNNKTVNYALEDDEDEFLESDNG
QDEDSYAYDGYYDQEVEENNTASIDQVLDHRLKGLDELTSDADEQAVKLETEKEERARLN
SSGDPYVDFEFKIKWTGISHLHNTWESYSDLNGFKGIKKVDNYIKQFIIYDQEVRNDTFT
TREDIEALDLDRERRREELAEYTHVERIVDSDRIIEDGDSKLQYLCKWKRLNYDECTWED
ANTIVKLSPDKVTHFQQRANSKTLPSLSASYGNNRPKFEKLEVQPVYIKNGELRDFQLTG
LNWMAFLWSRNENGILADEMGLGKTVQTVSFLSWLIFARRQYGPHLVVVPLSTVPAWQET
FEKWAPSVNTIYYMGNTNSRKMIRDYEFFLPGKSKKPKFNVLLTTYEYILKDRAELGQFK
WQFLAVDEAHRLKNAESSLYESLFDFKIANRLLITGTPLQNNIKELAALVNFLMPGKFTI
EQEIDFETASEEQETYIKDLQSKIHPFILRRLKKDVEKSLHSKTERILRVELSDLQTHYY
KNILTKNYAALNAGPKEAQISLLNVMAELKKTSNHPYLFDGAEEQVLANLGSSSRENIFR
GLIMSSGKMVLLDKLLTRLKKDGHRVLIFSQMVRMLDILGDYLTFKGYSFQRLDGTVPSA
RRRVAIDHFNADGSQDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRI
GQKNHVMVYRFVSKDTVEEEVLERARKKMILEYAIISLGISDPGQTKKKSNEPSSGELSE
ILKFGAGNMFKASDNQKKLEDLNLDDVLNHAEDHVTTPDLGESNLGGEEFLKQFEVTDYK
ADVDWDDIIPEDELKKLKEEEKKRQDEEYLKEQIEMFSKRKAALKAMENSAEGTDVESTD
GGSRRRRATETQGLIEKDYRTIYRALLRYGDLNDRWTELIGEGILPNKKVELMQDVYNGL
VHQAQDLLKAEDDRRSKENSVPDSANNDGPRKKERKAVLFEYHGVKNVNAEMVVSRPGDL
KLLSLKMPSDPLQFKFQRPPKVINGWSCEWTERDDAMLLVGIFKFGYGSWIQIRDDPLLG
LQSKIFLETAPSTLSKEEKEKFNKRTPGAVHLTRRVDYLLGFLKEEGEESKEEKKHTKRV
SKSSTPESRPKSKSLEIKKKKEPRRVLKKESKKEIKKDSKKENKDGKKDSKKEIKKEMKK
EIKKEIKKEVKKEVKKENVKERSHADKTSSDDDHLPPHEESICRSQLSKVQSSLSRLKQG
ENGLPRKEWAALLKKKLITIGDEIDKEAQGNSIKLKHLWVYATQYWPAKVPSKKIRNMYT
KLKGSST
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagagatttaccggacgaggtttttgaaaatcctgagctttacggacttcgccgc
agtcgaaggcctcatacagcacccataactacttctggcgaggatgatgatcaatctaat
gataagctagagtttgacgaatcatttgacgaatcggctagtgaagaaagtgacatagag
tttggagttgccaaaaagagaaaagttactccgaaggcggtttcaaaggagaagagatct
gcaaagacgaatggaaatcttgtggaagccgctgaggtcagattcagcacaagaaacaac
aaaacagtgaattatgctttagaagatgacgaggatgagtttttggagtcagataatggc
caagatgaggactcctacgcgtatgatggttactacgaccaagaagttgaggagaataac
acagcgagtatagatcaggttttagatcacaggctcaaaggtttggatgaactcacttct
gacgcagatgaacaagctgtaaaactggagactgaaaaagaggagagggccaggctgaat
agttcaggagatccttatgtagattttgagttcaagatcaaatggactggaatatcacat
ctacacaacacctgggagtcttattctgaccttaatggattcaaaggaattaaaaaagtt
gataactatatcaaacagtttatcatttacgatcaagaagtcagaaacgacacgtttact
accagagaagatattgaagccttggatcttgaccgcgagagaagaagagaggagcttgcc
gagtacacacatgtggagagaatcgttgacagtgacagaataattgaggatggtgactct
aaattgcagtatttgtgtaaatggaagcgtctcaattatgacgaatgcacctgggaggat
gccaacaccattgtcaaattgagtcccgataaagtcacacattttcaacagcgagctaac
tccaagactctacccagtctttctgcttcttacggcaataaccgtcccaaatttgaaaaa
cttgaggttcaaccggtttatattaagaacggagaactgagagattttcagcttactggt
ttaaactggatggcctttttatggtctagaaacgagaacggtattctagctgatgagatg
ggtcttggtaaaactgttcaaacggtttctttcttaagttggttgatatttgctagaaga
caatacggtcctcacttggtagttgttccgttatcaacagttccggcttggcaggagacc
tttgagaaatgggctccctctgtaaacaccatatattacatgggaaataccaattcccgt
aagatgatacgagactacgaattctttcttccaggtaagagcaagaagcccaagttcaat
gttctgcttactacctacgagtatattctcaaagatagagctgaattaggacaattcaaa
tggcaatttttggcagtcgacgaagcccatagactgaaaaacgctgaaagttcattatac
gaatctttgtttgattttaaaattgccaataggcttcttatcacaggaactcctcttcag
aataacataaaggagttagcagcactcgtcaactttttgatgcctggaaagtttacgata
gaacaggaaatcgattttgaaacagctagtgaggaacaagagacgtatatcaaagactta
caaagcaagattcatccttttattcttcggcgactgaaaaaggatgtggaaaagtcactg
cattccaaaacagaaagaattttacgtgtagaattatctgacttgcaaacacattactac
aagaatatcttgaccaagaattatgctgcactaaatgcggggcctaaagaagcccagatt
tcattgttaaatgttatggctgaattgaaaaaaacttcaaaccatccctacttgtttgac
ggagcagaggagcaagtgctcgcaaacttaggatcatcttcaagagaaaacatatttaga
ggtttaatcatgtcgtctggtaagatggttcttttggataaactactgactagattaaag
aaagacggacatagggtccttatattttctcaaatggttcgaatgctggatatattgggt
gattacttgacattcaaaggatatagtttccaaaggcttgatggtactgttccatctgcc
cgcagaagggtcgccattgatcatttcaacgcagatggatcgcaagattttgtttttctg
ttatcgacaagagcaggtggtcttggaattaatttaatgactgcggatacagttatcata
ttcgactcagattggaacccacaggcagatttgcaagcgatggcaagagctcaccgtata
ggtcaaaagaatcatgtcatggtgtatcgttttgtcagcaaagataccgtggaagaagag
gtcttagaaagagcccgtaagaagatgattttagaatatgcaatcatttctcttggtata
agtgaccctggtcaaaccaagaagaaatccaatgagccttccagtggtgagttatccgag
atcctcaagtttggtgcaggaaatatgttcaaagcctcggataaccaaaaaaagctagaa
gatttaaatctagatgacgtattgaatcatgctgaagaccacgtcactacaccggacctt
ggagagagtaatttgggaggcgaagagtttcttaaacagtttgaagttactgattataaa
gcagatgtcgattgggatgatatcattcctgaagatgaactaaagaaattaaaggaagag
gaaaagaaacgtcaggatgaagagtacctaaaggaacagatcgaaatgttctccaaacga
aaggccgctttgaaagcaatggagaacagcgctgaggggacagacgttgaaagtaccgac
ggtggaagccgtaggcgacgtgccactgagactcaaggactgatagagaaggattacagg
accatttatcgagcattattgaggtatggagatctgaatgatcgatggactgaactgatt
ggggaaggtattcttcccaacaagaaggttgagctaatgcaagatgtgtataatggcttg
gtacatcaggcccaagatttactgaaggctgaagacgaccgtcgatctaaagaaaactcg
gtgccagattcggcaaacaacgatggtcctagaaagaaggaaagaaaggccgttcttttt
gagtaccatggagtcaagaatgtcaacgcggagatggtagtttccaggcctggagatctg
aaacttttgtctttaaagatgccaagtgacccacttcaattcaaatttcagagacctccc
aaagtgatcaacggttggagttgtgaatggactgagcgtgatgacgctatgctattggta
ggaatattcaagtttggctatggctcttggattcagatacgagacgaccctttgctggga
ttgcagagcaaaattttcctggagactgcaccttcgactctttccaaggaggagaaggaa
aagttcaataaaagaacaccaggagctgtgcatttgacgagaagggtggattaccttctg
ggattcttaaaagaagaaggcgaagaatctaaagaagagaaaaagcacaccaaaagagtt
tccaaatcctccacccccgaatcaaggccgaagtccaaatctctcgaaatcaagaagaaa
aaagagccacgtagggtcttgaagaaggagtccaaaaaggagatcaagaaggacagcaag
aaggaaaacaaagatggcaagaaggacagtaaaaaggaaatcaagaaggagatgaagaag
gagatcaagaaggagattaagaaggaggtaaagaaggaggttaagaaggagaatgtaaaa
gaaaggtctcatgccgacaagactagttcggatgacgaccaccttccgccgcatgaagaa
tccatctgcagaagccaattgtccaaagtccaatcatcgttatcacgacttaagcaggga
gagaatggcttaccacgtaaagagtgggctgccctgctgaagaaaaaactcatcactatc
ggagatgagattgacaaagaagctcaagggaactcaataaagctcaagcatctgtgggtg
tatgctacgcaatattggcccgccaaggtccccagcaagaaaatcaggaatatgtacaca
aaattgaaggggagcagcacataa
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