Komagataella phaffii: PAS_chr3_0432
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Entry
PAS_chr3_0432 CDS
T01092
Name
(RefSeq) Evolutionarily-conserved 5'-3' exonuclease component of cytoplasmic processing (P) bodies
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ppa
Komagataella phaffii
Pathway
ppa03008
Ribosome biogenesis in eukaryotes
ppa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PAS_chr3_0432
09123 Folding, sorting and degradation
03018 RNA degradation
PAS_chr3_0432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppa03019
]
PAS_chr3_0432
03009 Ribosome biogenesis [BR:
ppa03009
]
PAS_chr3_0432
03016 Transfer RNA biogenesis [BR:
ppa03016
]
PAS_chr3_0432
03036 Chromosome and associated proteins [BR:
ppa03036
]
PAS_chr3_0432
Messenger RNA biogenesis [BR:
ppa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
PAS_chr3_0432
mRNA degradation factors
5'-3' decay
5' exonucleases
PAS_chr3_0432
Ribosome biogenesis [BR:
ppa03009
]
Eukaryotic type
Pre-60S particles
RNases
PAS_chr3_0432
Transfer RNA biogenesis [BR:
ppa03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
PAS_chr3_0432
Chromosome and associated proteins [BR:
ppa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
PAS_chr3_0432
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
MRP-L46
Motif
Other DBs
NCBI-GeneID:
8199563
NCBI-ProteinID:
XP_002492661
UniProt:
C4R4J6
LinkDB
All DBs
Position
3:839909..844264
Genome browser
AA seq
1451 aa
AA seq
DB search
MGIPKFFRYISERWPMISEPIEDSQIAEFDNLYLDMNSILHNCTHSNDGSVDLMKEEEMF
SAIFAYIEHLFTLIKPGKTFFMAIDGVAPRAKMNQQRSRRFRTAIEAEKSVEIAQKNGLI
TSKDENFDSNCITPGTEFMAKVTTNLKFFIHQKISSDAKWQKVQVILSGHEVPGEGEHKI
MDYIRFLKAQEGYDPNTRHCIYGLDADLIMLGLVIHDPHFAILREEVVFGRGSKASSTDV
SEQQFYLLHLSLLREYLALEFKDLEDQIKFDYDLERILDDFIFIMYVIGNDFLPNLPDLH
INKGAFPRLLATIKETMIDSDGYLQEGGVINMERFGLWLDHLSQFELQNFEQVDVDVEWF
NKQLENISLDGERKRERAGRKLLLRRQQELISKLRPWILEFYSSRDNIYSAHDDDSLIPT
LQLDTELMEEEIKLPFIKQFALDVGFFIVHSKSQNTYHAKIDIDGINVNESDEEFEARVL
YIRKKIKEYENSIFVEDENTLEEQKNIYDTKFVNWKNKYYKEKFGFTLSDTEDILKLTES
YIQGLQWVLFYYYRGVPSWQWYYPYYYAPRISDIKLGIKACLEFDKGTPFKPFEQLMAVL
PARSKQLVPACYRPLMTDPNSPIIEFYPDEVEIDKNGKTASWEAVVKINFVDEKRLLEAL
EPYNSKLNAEERQRNSLGTNIEFSYHPQVNQVHSSPIPTIFPDITEDHCYEIVVEFDKLH
SSTYAKPMKGAKQGINLLAGFPTLKTIPFTSQLMLAECHIFNQPTKSESMILSTQNPFEG
LTVEQFAAQNLGQTIYVNWPYLKEAKVVAVSDGLNVFEPGNKSIRTTRMESSEVSEFASD
VRYISETLFKRKGVLLVNYTEEELQGTPEPRRSPHNDDAIQGIVFVKKVNGVIRTRSGAY
VKTYSDKIEKYPINLLVDDVVNKDRRLLEKPPVPLEEEFPKGTTLISLGAFAYGTPATVV
DHQNDLMTVRFVNQPIKHEFNYGEIQAQREAHTNVYYPSFKVAKIVGITALALSRITSSY
RIVNGAKKTVNIGLDLKFEGRKLKVLGYTKRNEKHWSYSALAVNLLQQYQKRFPSVFKII
SLRNDSSIPEAKELFPQVPASQVDEKVNELVAWVKEQKKSFVVATLESESLTKVSIGKIE
QEVIKFVSKPHEHIPQKGLKGVPREATLDISNSSQFLSKQTFNLGDRVIYVEDSGKVPNF
SKGTVIGVRSVGTKVTLNVLFDLPLLSGNTFDGRLATPRGVTVDSSLVLNLTKRQLIYHD
RKPAKKEGKPGVKKTSQDSKKQTVKLQNGSGKAKQAQDAELSVTTTPVPVPAANTAPVTA
SVQATSVVTATVPTSKPSNNSEDEHELLRLLKGNKDSSESQGSQEPLARTSIQQIYGTVF
NQVLSAQPQLQPVRGFSNPVPETPVNGVQANEQHSDSTPQNHSRDENQGRGRGRGRGNRR
GRGRGRGKGGQ
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgggtattccaaagttttttcggtacatctctgagagatggccgatgatatctgagcca
atagaagacagccaaattgccgagtttgataacctgtatctggacatgaactcaattctt
cataattgtacacatagtaacgatggatcagttgatttaatgaaagaagaagagatgttc
agtgctatttttgcttacattgaacatcttttcactttgatcaaacctggaaagacgttt
ttcatggccattgatggtgttgctcctagagcaaagatgaaccagcaacgatctagaaga
ttcaggacggccattgaggcagaaaaaagtgtagagatagcccaaaagaatggactcatt
actagcaaagacgagaattttgacagtaactgtatcactcctggaacggagtttatggcc
aaggttaccactaacttgaagtttttcatccaccagaaaatctcttcagatgcaaaatgg
cagaaagtccaggttattctcagtggacatgaagtccccggagaaggagagcacaaaatt
atggactatattcgttttttgaaggctcaagaggggtatgatccgaatacgagacattgt
atttacgggctggatgcagacttgatcatgttgggattggtcattcacgatcctcatttt
gccatcttgagagaagaggttgtgttcggaagaggatccaaggcctcgtcaacagatgtg
tcagaacagcaattctaccttctacatctctccttgttacgtgaataccttgctcttgag
ttcaaagatttagaagaccagataaagtttgattatgacttagagagaatcttggacgat
tttatttttatcatgtatgttattggaaatgatttcttacccaacttacctgacttgcat
atcaacaaaggtgccttccccagactcttagcaacgatcaaagaaaccatgatagattcg
gatggatatctccaagaaggaggtgtcatcaatatggaacgattcggtctgtggcttgac
cacttgtcacaatttgagcttcaaaattttgagcaggtcgacgtggatgtagaatggttt
aacaagcagctagagaacatatccctagatggtgagcgaaagagggaaagagctggaaga
aagttgttgcttagacgtcaacaggaattaatttcaaaacttagaccatggattctcgag
ttttattcatcaagagacaatatatattctgctcatgatgatgactccttaattccaact
ttgcaattggacaccgaattgatggaagaagaaatcaagttacccttcataaagcagttt
gcacttgatgttggtttctttattgtgcacagcaaatctcagaatacgtaccatgctaag
atagacattgatggtataaatgtcaatgaatctgatgaagaatttgaagctcgtgtcttg
tatatcaggaagaagatcaaagaatatgaaaactcaatttttgttgaagatgaaaacact
ttagaggaacaaaagaacatttatgataccaagttcgtcaactggaaaaacaaatattac
aaagaaaagtttggatttactctttctgacacagaggacattttgaagttgacggagtcg
tatattcagggtcttcaatgggttttgttctactattatcgaggagttccttcttggcaa
tggtactatccttattactatgctcctagaatctctgacatcaaattagggattaaggct
tgcctggagtttgacaaaggtacaccgttcaagccatttgaacaattaatggctgtcctt
cctgcaagatcaaaacagttagttcctgcttgttatagaccgttgatgaccgatccaaac
tctcccattattgaattttaccctgatgaggttgaaattgacaagaatggaaagactgcc
tcttgggaggctgttgttaaaatcaactttgtcgatgaaaaacgactattagaggcactg
gaaccgtataatagtaagttgaatgctgaagaacgtcaaagaaactctttgggcacgaat
atcgagtttagctatcatcctcaagtgaatcaagttcattcttccccaattccaacaata
ttcccagatatcactgaggatcactgctacgaaatagtggtcgaatttgacaagctgcac
tcttcaacttatgctaaacctatgaaaggtgccaaacaaggtataaatctattggctgga
ttcccaactttgaagaccattcccttcacttcgcagctcatgttagcggaatgccatatt
tttaaccagccaacaaaatcggaatcgatgattctaagtacacagaatccgtttgaagga
ctcactgtagagcagtttgctgctcagaatttgggccaaacaatctatgtcaactggcct
tatttgaaagaggccaaagttgttgcagtttctgacggtttgaacgtttttgagcctgga
aacaagtctatccgaacgactcgtatggaaagctctgaagtctcagaatttgccagtgac
gttcgctatatcagtgagacgctattcaagagaaaaggtgttttactggtgaactacact
gaggaagagttgcaaggaacacctgagcctcgtagatcccctcacaatgacgatgcgatc
caaggaattgtgtttgtaaagaaagtgaatggtgttattcgcactagatcgggtgcctat
gtgaagacatacagtgacaagattgagaaataccctattaatttgcttgttgacgacgtg
gttaacaaggatcgtcgattattagaaaaacctcctgtgccattagaagaagaattccca
aagggtactactctcataagtttgggagcttttgcttacggaactcctgctactgttgtt
gaccaccaaaatgacttaatgaccgtcagattcgtaaaccagccaattaagcatgaattt
aactatggtgagattcaagcacaaagggaggcacacaccaatgtgtattatccctccttt
aaagttgccaaaatcgttggaattacggcgctagccttgtccagaataacctcttcctat
agaatagttaatggagctaagaaaactgttaacatcggattagatttgaagtttgaagga
agaaagttaaaggttctgggatacactaaaagaaacgagaaacattggtcatacagcgct
ttggctgtaaacttgctgcaacaatatcagaaacgtttcccatctgtttttaagataatt
tctctccgaaatgattcttcaattcctgaagccaaagaactgtttcctcaagtccccgct
agccaagtggatgaaaaagtcaatgaacttgtggcttgggttaaagaacaaaagaaaagc
tttgttgttgcaacattggagtctgagtctttgaccaaggttagtatcggaaagattgaa
caggaagtgattaagtttgtttcaaaaccacatgaacatattccccaaaagggtttgaaa
ggagttcctcgtgaggctactctggatatcagcaactcttctcaatttctttccaagcag
acttttaatctaggagacagagtgatctacgtagaagattctggtaaggtacccaacttc
agtaaaggtacagttattggggttcgaagtgtcggtacgaaagtgactttgaacgtattg
tttgacttgccattgctctctggtaatacctttgatggaagacttgcaacccccaggggt
gtcactgttgatagttcattggtattgaacttaacaaagcgtcaattgatttaccacgat
aggaaacccgctaagaaagaaggtaagcctggagttaagaagacatctcaggactccaaa
aagcaaacagtgaagttgcagaacggttcaggtaaggccaaacaggcacaagatgctgaa
ctgtcagtcactacgacacctgttccggttcctgccgctaacactgcaccagttactgca
tctgtacaggctacctcggtggttactgctaccgttccaacttctaaaccttcaaacaac
tctgaggacgaacatgaattacttcgcttactgaaaggtaacaaggacagtagtgaatcg
caaggctctcaagagcctcttgcccggacttctatccagcaaatttacggaacggtgttc
aatcaagtgttgagcgctcaacctcagttgcagcctgtcagaggcttctcaaatccggta
cctgaaacccctgtaaatggagtccaagcgaatgaacaacactctgattctacccctcaa
aatcattctagggatgaaaaccaaggaagaggtcgtggtagaggcagaggaaatagaaga
ggaagaggtcgaggtagaggcaaaggaggacagtaa
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integrated database retrieval system