Komagataella phaffii: PAS_chr4_0061
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Entry
PAS_chr4_0061 CDS
T01092
Name
(RefSeq) Component of the RNA polymerase II general transcription and DNA repair factor TFIIH
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
ppa
Komagataella phaffii
Pathway
ppa03022
Basal transcription factors
ppa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PAS_chr4_0061
09124 Replication and repair
03420 Nucleotide excision repair
PAS_chr4_0061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppa03021
]
PAS_chr4_0061
03400 DNA repair and recombination proteins [BR:
ppa03400
]
PAS_chr4_0061
Transcription machinery [BR:
ppa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PAS_chr4_0061
DNA repair and recombination proteins [BR:
ppa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PAS_chr4_0061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
8201319
NCBI-ProteinID:
XP_002493466
UniProt:
C4R6R2
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All DBs
Position
4:complement(join(123273..123453,123522..123556))
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AA seq
71 aa
AA seq
DB search
MPRAIKGALVKCDPSIRALILKIDAESHDIVIEELDDTHLVVDQNRIPFVKAELARILAQ
NSYNPLDEDEA
NT seq
216 nt
NT seq
+upstream
nt +downstream
nt
atgcccagagcaatcaaaggtgctctcgttaaatgcgatccatcaattagagcactaata
ttgaagattgatgctgagagccatgacattgtcatagaagaacttgatgatacccactta
gtagtagatcagaacaggataccgtttgtcaaagctgaattggcccgaatcttagcacaa
aattcctataatcccttggatgaagacgaagcatga
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