Pseudomonas paraeruginosa: B7D75_10160
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Entry
B7D75_10160 CDS
T08722
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ppaa
Pseudomonas paraeruginosa
Pathway
ppaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B7D75_10160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppaa03400
]
B7D75_10160
Enzymes [BR:
ppaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B7D75_10160
DNA repair and recombination proteins [BR:
ppaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B7D75_10160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AroM
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVR70810
LinkDB
All DBs
Position
complement(2119201..2122647)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSVLRLPNLPAAAGKQHWGNLPGAALSLAIAEAASSARRFTLLLTADSQNAERLEQELRF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYQLPQLRHGVLVVPISTALHRLAPT
RFLLGSSLVLDIGQKLDVERMRLRLEGAGYRCVDTVYEHGEFAVRGALIDLFPMGSELPF
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLNKEAVTGFRGRFRERFDVDYR
RCPIYQDLASGLTPSGIEYYLPLFFEETATLFDYLPQDTQVFSLPGIEQAAEQFWGDVRS
RYEDRRVDPERPLLPPAEVFLPVEDCFARLKNWPRVVASQEDVEPGVGRERFPALPLPNL
AIEAKAAEPLAALRRFIEEFPGRVLFCAESAGRREVLLELLARLKLRPEEVDGWPAFLAS
QARLAISIAPLDEGLLLDHPALALVAESPLFGQRVMQRRRREKTRDGGDAVIKNLTELRE
GAPVVHIDHGVGRYLGLITLEVDNQQAEFLMLQYAEDAKLYVPVANLHLIARYTGADDAL
APLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFKDPQADYATFSAGFPF
EETPDQQSAIEAVVADMLAPRPMDRLVCGDVGFGKTEVAMRAAFVAVHSGKQVAVLVPTT
LLAQQHYNSFRDRFADWPVNVEVMSRFKSAKEVESAARQLAEGKIDILIGTHKLLQEDVR
FANLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP
PARRLSVRTFVMEQQNAVIKEALLRELLRGGQVYYLHNEVKTIEKCARDLAELVPEARIG
IGHGQMHERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTILIERADKFGLAQLHQL
RGRVGRSHHQAYAYLLTPPRRQMTPDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELL
GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEVNLRVPALIPEDYLPD
VHARLILYKRIANATDEDGLRELQVEMIDRFGLLPDPAKNLMRLTLLKLQAEKLGILKVD
AGPQGGRIEFAADTQVDPLVLIKLIQGQPNRYKFEGATLFRFQVPMERPEERFNTLEALF
ERLAPQTT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttcccaacctgccggccgccgccggcaagcagcactggggcaac
ctccccggtgccgccctgagcctggccatcgccgaggccgccagttccgcccggcgcttc
accctgttgctgaccgccgacagccagaatgccgagcgcctggagcaggaactgcggttc
ttcgcccccgacctgccggtgctgcatttccccgattgggaaaccctgccctacgacgtc
ttttcgccgcaccaggacatcatttcccagcgtatcgccgctctctaccagttgccacag
ctcaggcacggcgtgctggtggtgccgatctccacggccctgcaccgcctggcgcccacg
cgcttcctgctcggcagcagcctggtcctggatatcggccagaaactcgacgtcgagcgg
atgcgcctgcgcctggaaggcgccggctaccgctgtgtcgataccgtctacgaacacggc
gagttcgccgttcgcggcgcgctgatcgacctgttcccgatgggcagcgagctgcccttc
cgtatcgatctgttcgatgacgagatcgagaccctgcgcaccttcgacccggagacccag
cgctccatcgacaaggtcgagtcgatccgcctgctgccggcgcgcgagttccctctcaac
aaggaagcggtcaccggcttccgcggccgcttccgcgagcgcttcgacgtcgactaccgg
cgctgcccgatctaccaggatctcgccagcggtttgacaccctcgggaatcgagtactac
ctgccgctgttcttcgaggaaaccgccaccctcttcgactacctgccgcaggacacccag
gtgttctccctgcccggtatcgagcaggccgccgagcagttctggggcgacgtgcgcagc
cgctacgaggaccgccgggtcgatccggaacgcccgctgctgccgccggcagaagtattc
ctgccggtggaagactgcttcgcccgactgaagaactggccacgggtggtcgccagccag
gaggacgtcgagccgggcgtcggccgcgagcgcttccccgccctgccgctgccgaacctg
gcgatcgaagccaaggccgccgagccgctggccgcgctgcgccggttcatcgaggagttc
cccggccgcgtactgttctgcgccgaatcggccggacgccgggaggtgctgctggagctg
ctggcccggctgaagctgcgtcccgaggaagtcgacggttggccggccttcctcgccagc
caggcacgcctggcaatcagcatcgcgccgctggacgagggtctgctgctggaccatccg
gcactcgccctggtcgccgaaagcccgctgttcggccagcgcgtcatgcagcgccggcgc
cgggaaaagacccgcgacggcggcgacgcggtgatcaagaacctcaccgagctgcgcgaa
ggcgcgccggtggtgcacatcgaccatggcgtcggccgctacctgggcctgatcaccctc
gaggtggacaaccagcaggcggaattcctcatgctgcaatacgccgaggacgccaagctc
tacgtgccggtcgccaacctgcatctgatcgcccgctacaccggcgccgacgacgccctc
gcgccgctgcaccggctcggctcggaaacctggcagaaggccaagcgcaaggccgccgag
caggtccgcgacgtcgctgccgagctgctcgacatctacgcccgccgcgcggcccgcgaa
ggcttcgccttcaaggacccgcaggccgactacgcgaccttctccgccggcttccccttc
gaggaaaccccggaccagcagagcgccatcgaggcggtggtggccgacatgctggcgccc
aggccgatggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaggtggccatg
cgcgcggcgttcgtcgccgtgcacagcggcaagcaggtggcggtgctggtaccgaccacc
ctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgactggccggtcaac
gtcgaggtgatgagccgcttcaagagcgccaaggaagtcgagagcgccgcgcgacagttg
gccgaaggcaagatcgacatcctcatcggtacccacaagctgctccaggaagacgtcagg
ttcgccaacctgggcctggtcatcatcgacgaggaacaccgtttcggagtgcgccagaag
gaacagctcaaggcgctgcgcagcgaggtggacatcctcaccctcaccgccacgccgatc
ccgcgtaccctcaacatggccgtctccggcatgcgcgacctgtcgatcatcgccaccccg
ccggcgcgccgcctgtcggtgcgtaccttcgtcatggagcagcagaacgcggtgatcaag
gaagccctgctccgcgaactgctgcgcggcggccaggtgtactacctgcacaacgaagtg
aagaccatcgagaagtgcgcccgcgacctcgccgagctggtcccggaggcgcgcatcggc
atcggccacggacagatgcacgagcgcgagctggaacaggtgatgagcgacttctaccac
aagcgcttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagc
gccaacaccatcctcatcgagcgcgccgacaagttcggcctggcccagttgcaccagttg
cgcggccgcgtcggtcgcagccaccaccaggcgtacgcctacctgctgacgccgccgcgc
cggcagatgaccccggatgccgagaaacgcctggaagccatcgccaacgcccaggacctg
ggcgccggcttcgtcctcgccacccatgacctggagatccgcggcgccggcgaactgctc
ggcgacgggcagagcgggcagatccaggcggtcggtttcaccctctacatggaaatgctc
gagcgcgcggtgaaggccatccgcaagggcgagcagccgaacctcgagcagccgctgggc
ggcggcccggaggtcaacctgcgggtaccggcgttgatccccgaggactacctgcccgac
gtgcacgcccggctgatcctctacaagcgcatcgcaaacgccaccgacgaggacggcctg
cgcgaactgcaggtggaaatgatcgatcgattcggcctgctgcccgatccggcgaagaac
ctgatgcgtctgacgcttctgaaattgcaggcggaaaagcttggaatcctcaaggtcgat
gccggaccacagggtggtcgtatagaattcgccgccgatacccaggtcgatccgctggtc
ctgatcaagctgatccagggccagccgaaccgctacaagttcgaaggcgccaccctgttc
cgcttccaggtacccatggaacgaccggaagaacgcttcaataccctggaggcgctgttc
gagcgcctcgcaccgcaaaccacctaa
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