Pseudopropionibacterium propionicum: HMPREF9154_0304
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Entry
HMPREF9154_0304 CDS
T02180
Name
(GenBank) apurinic endonuclease (APN1)
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
ppc
Pseudopropionibacterium propionicum
Pathway
ppc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF9154_0304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppc03400
]
HMPREF9154_0304
Enzymes [BR:
ppc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
HMPREF9154_0304
DNA repair and recombination proteins [BR:
ppc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HMPREF9154_0304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
DUF3626
PRMT5_TIM
Motif
Other DBs
NCBI-ProteinID:
AFN47714
LinkDB
All DBs
Position
complement(317470..318252)
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AA seq
260 aa
AA seq
DB search
MLIGAHVDADAAIAQAVALGADIAQVTLGDPQSWRKPTVPGDGAAALRSQAEDAGIGLYV
HAAYVINVASTNNRIRIPSRKLLQQTIDAAAGIGANGVIVHGGHVTADEDQRRGYENWRK
CVDGLDLKVPILIENTAGGKKAMMRYLESIRDLWAAFDGSDNLGGVGLCLDTCHAHAAGL
DLTTVVEDVRAVTGRIDLVHCNDSRDAAGSGRDRHAPLGRGQLDPEVLVALLRDADAPVM
LETPPENHAEEIAWLREQLG
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcggtgctcatgttgacgcggacgccgcgattgcgcaggccgtcgctttgggg
gcggacatcgcccaggtgaccctcggcgacccgcagtcgtggaggaaacccaccgtcccc
ggcgacggggccgccgccctgaggtcgcaggccgaggatgccgggatcgggctctacgtg
cacgccgcgtacgtcataaacgtcgcctccaccaacaatcgcatccgcatcccgtcgcgg
aaactgctgcagcagaccatcgacgcggccgccgggatcggggcgaacggggtgatcgtc
cacggcgggcatgtcaccgccgacgaggatcagcggcggggctacgaaaactggcgcaag
tgcgtcgacggcctcgatttgaaggtgccgatcctgatcgagaacaccgcgggcggcaag
aaggcgatgatgcgatacctcgaatccatccgtgacctgtgggccgccttcgacggctcc
gacaacctgggcggcgtcggtctctgcctggacacctgccacgcgcacgcagccggcctg
gacctgaccaccgtggtggaggacgtgcgggccgtcaccggccgcatcgacctggtccac
tgcaacgattcccgcgacgcggccggttccgggcgcgaccgccacgccccgctgggacgc
ggccagctcgacccggaggtcctcgtcgccctgctgcgcgacgccgacgccccggtcatg
ctggaaaccccgccggagaaccacgcggaggagatcgcctggctgcgggagcagctgggc
tga
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