KEGG   Pseudomonas pergaminensis: KUA23_06610
Entry
KUA23_06610       CDS       T08563                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ppeg  Pseudomonas pergaminensis
Brite
KEGG Orthology (KO) [BR:ppeg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppeg03400]
    KUA23_06610
Enzymes [BR:ppeg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     KUA23_06610
    5.6.2.6  RNA 3'-5' helicase
     KUA23_06610
DNA repair and recombination proteins [BR:ppeg03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    KUA23_06610
SSDB
Motif
Pfam: Lhr_WH DEAD_assoc DEAD Helicase_C ResIII GpA_ATPase
Other DBs
NCBI-ProteinID: USW02394
LinkDB
Position
complement(1472989..1475469)
AA seq 826 aa
MAKPVDFAKQWFATKGWKPFAFQKDVWAAVKGGQSGLLHASTGAGKTYALWFAALNRFAM
TRPPATGKRKPPAEPLTVLWITPMRALAADTARALEAPLEALQIPWSVGLRTGDTSSSER
ARQTRRQPTALITTPESLTLMLARADSEVSLAHLRMVVVDEWHELIGNKRGVQLQLALAR
LRRWHPDVMVWGISATLGNQSHALEVLVPQGGGVNVQGKTAKQLKVDTLLPPVAERFPWA
GHIGLKMLPQVVAEVDASSSCLVFTNTRAQSEIWYQAILDARPDWAGVIALHHGSLSRET
RDWVERALKDGQLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLMQRAGRSGHAPGRP
SRVTLVPTHSLELVEAAAAQDAIAQRRIEARESPHKPLDVLVQHLVSMALGGGFTPDALL
AEVRGAWAYRDLTDEDWAWALGFVRHGGLSLTAYPDYRRVEPDEHGIWRVPDARLARRHR
MSVGTIVSDASIQLKFWSKGGGGKNLGSVEEGFIARLKPGDGFLFAGRLLELVRVENMTA
YVRRSTAKKAAVPRWNGGRMPLSNELAQAVVERFDAAAHGHYEGPEMQAVQTLLQTQLRW
SGLPTREHLLAEALKSREGWHLFLYPFAGRQVHLGLASLLAWRVSQQQAVTFSIAVNDYG
LELLSATAVDWPVLLNDALLSPEHLLEDVAASLNAGELALRRFREIARIAGLVFAGYPGA
PKSTRQVQASSGLFFEVFKQYDPQNLLLTQAGEEVLRDELDIHRLEATLRHLSALKRDLH
LIERPTPLAFPLLVERMRESLSSEKLSERIARMVKDLEKVADNGKR
NT seq 2481 nt   +upstreamnt  +downstreamnt
atggcaaaacccgtcgacttcgccaaacaatggttcgccactaaaggctggaagccgttc
gcctttcaaaaagacgtctgggcggcggtcaagggcggccagtcagggctgctgcatgcc
agcaccggcgcgggtaaaacctacgcactgtggttcgccgccctcaatcgcttcgccatg
actcgcccacccgctacaggtaaacgcaaaccacccgctgagccgctgacggtactgtgg
atcacgcctatgcgtgccctcgcggccgacaccgcccgagccctggaggcgccgcttgaa
gccttgcagattccctggagtgtcggcctgcgcaccggcgataccagcagcagcgagcgc
gcccgccagacccgtcgccagcccaccgcactgatcaccacaccggaaagcctgaccctg
atgctggcacgcgccgacagcgaagtcagtctggcgcacctgcgcatggtggtcgtggat
gaatggcacgaattgattggcaacaagcgcggcgtgcagctgcaactggcactggcgcgg
ctgcggcgttggcatccggatgtgatggtgtggggtatctcagcgaccttgggcaatcaa
tcccacgccttggaggtattggtcccacaaggtggcggggtcaatgtgcaagggaaaacg
gctaaacaattgaaggtcgacaccttgctgccacccgtcgccgagcgttttccctgggcc
gggcacatcggcctgaagatgctgccccaagtggtggctgaggtggacgccagcagcagt
tgcctggtgtttaccaatacgcgggcgcagtcggaaatctggtatcaggcgatattggac
gcacgccctgactgggctggggtaatcgccctgcaccatggctcactgtcgagagaaacc
cgcgattgggtagaacgagcattgaaagacggccagctcaaggccgtggtgtgcacatcg
agcctggacctgggggtggatttcctgccggtggaacgggtgctgcagatcggctctgcc
aaaggcgtggcgcgcctgatgcaacgcgccgggcgttcggggcatgcacccgggcgcccc
tcgcgggtgacgctggtgccgacccacagcctggagctggtggaagccgcagcggcccag
gacgcgattgcccagcggcgcattgaagcgcgcgaatcaccgcacaagccattggatgtg
ctcgtacaacacttggtcagcatggcgctcggcggcggctttacgcccgacgcgttactg
gccgaagtgcgcggtgcctgggcctatcgcgacctgacggacgaagactgggcgtgggcc
ctggggtttgtgcgccatggcggcttgtcgctgacggcctacccggattaccgccgcgtg
gagccggacgagcacggcatctggcgtgtacccgatgcgcggctggcgcgtcgtcatcgg
atgagcgtcggcacgattgtcagcgatgccagtatccagctgaaattctggagcaagggc
ggtggcggcaagaacctggggagcgtcgaggaaggctttatcgcgcggctcaagccgggt
gatggcttcttgttcgcggggcgattgctggagttggtgcgggtggaaaacatgaccgcc
tatgtgcgccgcagcaccgccaaaaaggctgcggtgccacgctggaatggggggcgcatg
ccgctttccaatgagctggcgcaagccgtggtcgagcgttttgatgcggcggcgcacggg
cactatgaaggcccggaaatgcaggcggtgcaaaccctgctgcaaacacagttgcgctgg
tcgggcctaccgacacgcgagcatttgctggccgaggcgctgaagtcgcgagaggggtgg
cacctgtttctgtatccattcgccgggcgccaggtgcacttgggcctggcaagtctactg
gcatggcgggtgagccagcagcaggccgtgacgttttcgattgccgtcaatgattacggg
ctggagttgttgagcgccaccgccgtggattggccggtgttgctgaatgacgcgctactg
agccctgagcatttgctggaagatgtggcggccagcctgaatgccggggagttggccctg
cgccgctttcgcgaaatcgcccgcatcgccgggttggtgtttgccggttatccaggagcg
ccgaaaagtacacggcaagtgcaggcctccagcggattgttctttgaggtgttcaagcaa
tatgacccgcagaacctgctgctgacccaggccggggaagaagtcctgcgcgacgagttg
gatattcatcggctggaagcgacattgcgtcatctttcagcgctcaaacgcgacctgcac
ctgattgaacggcctacgcctttggcctttccgctgctggtggagcgaatgcgcgaaagc
ttgagttcggaaaaactctcggagcgcattgcgcggatggtcaaggacctggaaaaagtc
gcggataacgggaagcgctga

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