Pediococcus pentosaceus SL4: T256_07050
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Entry
T256_07050 CDS
T02906
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ppen
Pediococcus pentosaceus SL4
Pathway
ppen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T256_07050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppen03021
]
T256_07050
03400 DNA repair and recombination proteins [BR:
ppen03400
]
T256_07050
Enzymes [BR:
ppen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T256_07050
Transcription machinery [BR:
ppen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T256_07050
DNA repair and recombination proteins [BR:
ppen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T256_07050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AHA05498
LinkDB
All DBs
Position
complement(1368132..1371740)
Genome browser
AA seq
1202 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYARIKEVLDLPNLIEIQSDSYQWFLDEGLREMFNDIMPIEDFAG
KLSLEFVDYQLLEPKYTVDEAREHEANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNLDTDKNNRKIWGTTVIPNRGAWLEYETDAKEIS
YVRIDRTRKIPMTELVRALGFGSDEEIIDIFGGSDSLDFTLDKDVHKNPEDSRVAESLKD
IYERLRPGEPKTADSSRSLLTARFFDPKRYDMAPVGRYKVNKKLSLKTRLLGQTLAETLA
DPDTGEVIAQKGEMVNKDVMKKLAVFLDRPDFKMVTYQPSEEAVVTEPMTIQVIKVQDPN
DPERTLNMIGNGNIDAKLKHITPADIIASMNYFFLLQDGIGSTDDIDHLGNRRIRSVGEL
LQNQFRIGLSRMERVVRERMSIQDAETVTPQQLINIRPVVAATKEFFGSSQLSQFMDQTN
PLGELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLASYG
KINRYGFIETPYRRVSWEDHKVTDRIDYLTADEEDQFVIAQANSPLNDDGSFADDVVMAR
HESDNIETSIENVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLVDPHS
PLIGTGIEYKAAHDSGVALLCQHAGVVEYVDAREVRVRRDDGALDTYKLMKFRRSNGGKN
YNQRPIVRVNDKVDADEVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIAINERLVR
DDVYTSIHIEEYESEARDTKLGPEEMTREIPNIGEDALRNLDQDGIVRVGAEVEDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTRENGDELSP
GVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPQEDMPYMPDGTPIDIMLSPMGVP
SRMNIGQVLELHLGMAARNLGIHMTTPVFDGAQDKDIWEAVAEAGMDSDAKSVLYDGRTG
EPFEQRVAVGVMHYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPRPGVPESFRVLVKELQALGLDMK
VLGGDDQEVELRDMDEEDDDVVNVDALSKYAEKQNEKTNASAEEAKAPSTESAPVETKNN
QN
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatttagttaagtatggtaaacatcgtacgcgccggagctatgcacgaatt
aaagaagtgcttgatctacctaatttgatcgagattcaatctgattcgtaccaatggttc
ttagacgaaggtctccgtgaaatgttcaatgacattatgccgattgaagattttgcaggt
aaattatcacttgaattcgtcgattatcaactactagaaccaaagtacacggttgacgaa
gctcgtgaacatgaagcaaactattctgcaccattgcacgtaactttacgtttaacaaac
cacgaaactggcgaaattaaatcacaagacgtattctttggtgatttcccattaatgaca
gaacaaggtactttcattattaatggagcagaacgtgttattgtttcacaattagttcgt
tcacctggtgtctattacaacttagatacagataaaaataatcgtaaaatttggggaaca
accgttattcctaaccgtggggcttggttagaatatgaaacagatgctaaagaaatttct
tatgtacggattgatcgtactcgtaagattccaatgaccgaattagttcgtgcccttgga
tttggctctgatgaagaaatcatcgatatttttggtggttctgatagtttagatttcact
cttgataaagatgttcataagaatcccgaagattcacgggttgctgaatcattgaaggat
atttacgaacgtttgcgtccaggtgaacctaagactgcagatagttcaagaagtttgcta
actgcgcgcttctttgatccaaaacgttacgacatggctccagtaggtcgttacaaagta
aataaaaaacttagccttaagactcgtcttttaggtcaaaccctagctgaaacattagct
gatcctgatacaggggaagttattgctcaaaagggtgaaatggtcaacaaagacgtaatg
aagaaattagcagttttccttgatcgtcctgacttcaagatggttacataccaaccatct
gaagaagcagtcgttactgaaccaatgactatccaagttatcaaagttcaagaccccaac
gacccagaacgtacattgaatatgattggtaatggtaatatcgatgctaaattgaagcac
atcacacctgctgatattatcgcttcaatgaattacttcttccttcttcaagatggaatt
ggtagtacagatgacattgatcatttgggtaaccgtcgaatccgttcagttggtgaacta
cttcaaaaccaattccgcattggtttatcacgtatggaacgtgtagtacgtgaacgtatg
tcaatccaagatgctgaaacagttacaccacaacaattgattaacattcgtccagtagtt
gctgcaactaaagaattctttggttcttcacaattgtcacaattcatggatcaaactaac
ccgcttggtgaattatcacataagcgtcgtctatcagcacttggacctggtggtttgact
cgtgatcgtgccggatatgaagttcgagacgttcactatacgcattatggtcgtatgtgt
ccgattgaaactcccgaaggtcctaatatcggtttgattaataacttggcttcatatggt
aagatcaaccgttatggttttatcgaaacaccatatcgtcgtgtttcatgggaagatcat
aaagttacagatcgtattgattacttaactgctgacgaagaagatcaatttgttattgct
caggctaactctccacttaatgatgatggttcatttgctgacgacgtagttatggctcgt
catgaaagtgataacatcgaaactagcattgaaaatgtcgattacatggacgtttctcct
aagcaagtagttgctgttgctacagcatgtattcctttcttggaaaatgatgattctaac
cgtgccttgatgggtgctaatatgcaacgtcaggctgttccattggttgatccacattct
ccattaattggtactggtattgaatataaagctgcgcatgattctggggttgctctttta
tgtcaacacgctggtgtagttgaatatgttgatgcacgtgaagtacgtgtccgtcgtgat
gatggcgcacttgatacttacaagctcatgaagttccgccgttcaaatggtggtaagaac
tacaaccaacgcccaattgttcgagttaatgataaagttgacgcggatgaagtactagct
gatggtccatcaatggaacaaggtgaattagcccttggacaaaacccattgattgccttc
atgacatggcaaggttataacttcgaagatgcgattgcgattaatgaacgtttagttcgt
gatgacgtatatacatcaattcatatcgaagaatatgaatcagaagcacgtgatacaaaa
cttggacctgaagaaatgactcgtgaaattcctaatattggtgaagatgcccttcgcaat
cttgatcaagatggtattgttcgagttggtgctgaagttgaagatggtgacatcttggtt
ggtaaggttactcctaagggggttacagaattatctgctgaagagcgcttgcttcatgct
attttcggtgaaaaagctcgtgaagttcgtgatacatcactccgtgttccacatggtggc
ggcggaatcgttcaagacgttaagattttcactcgtgaaaatggtgacgaattatcacct
ggtgtaaacatgatggttcgtgtttatatcgctcaaaagcgtaaactccaagttggtgat
aagatggccggacgtcatggtaacaaaggtactgtttcagtggttatcccacaagaagat
atgccttacatgcctgatggaactccaattgacattatgcttagcccaatgggtgtgcct
tctcgtatgaatatcggacaagttcttgaacttcatttgggaatggctgcacgtaactta
ggtatccacatgacaactcctgtttttgatggagcccaagataaagatatttgggaagca
gttgctgaagctggtatggattctgatgctaagtctgtgctttatgatggacgtactggt
gaaccattcgaacaacgtgttgctgttggtgtcatgcactatatgaaacttgctcacatg
gttgatgataagattcatgctcgttcaattggaccttactcacttgttacacaacaacca
cttggtggtaaagcacaatttggtggacagcgttttggtgaaatggaagtttgggctctt
gaagcttacggtgctgcatatactcttcaagaaatccttacttacaagtctgatgacgtc
gttggtcgagttaagacatacgaagcgatcgttaagggtgaaccaattccacgcccaggt
gttccagaatcattccgagttcttgttaaagaattacaagctttaggacttgatatgaag
gttctaggtggggatgaccaagaagttgaacttcgtgatatggacgaagaagatgacgat
gttgtgaatgtcgatgctcttagcaagtatgctgaaaagcaaaatgaaaaaacaaatgct
agcgctgaagaagcaaaggctccatcaacggaatcagctcctgttgaaactaaaaacaat
caaaactaa
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integrated database retrieval system
