Pseudoalteromonas phenolica: PP2015_2797
Help
Entry
PP2015_2797 CDS
T04165
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pphe
Pseudoalteromonas phenolica
Pathway
pphe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pphe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PP2015_2797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pphe03021
]
PP2015_2797
Transcription machinery [BR:
pphe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PP2015_2797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
DUF5950
HTH_Tnp_Mu_2
Motif
Other DBs
NCBI-ProteinID:
ALO43282
UniProt:
A0A0S2K5S8
LinkDB
All DBs
Position
I:3193764..3195599
Genome browser
AA seq
611 aa
AA seq
DB search
MDQSPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIKVAENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIEIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEIRLSDIISGFFDPDAEETQISATHI
GSELSEEELDDEDDDSDDEDEEEADTGPDPEEARENFEKLRELYNAARVIFETKGRAHPD
AQVAITEIGDHFRTFKLVPKQFDRMVNNMREMMDKVRVQERIVMKQVVQIAKVPKKTFVK
HFANNETDMAWVDAEIAANEKYSVKLQEVKPEVERCINKLKAIEESTGLTIERIKDINRR
MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELA
ERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIESPIDSATMESLRGAT
NEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
DLLKSFLDVKG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggatcaatctcctcagtcacaactcaaacttctgattcagaaaggtaaagaacaaggt
tacttaacgtttgcagaagttaacgatcaccttccacaggacatcatagattcagatcaa
gtagaagacatcattagcatgattaatgacatgggtattaaggttgcagaaaatgcacct
gatgccgatgaactaatgatgcaagaaactacgacagacgaagatgctgctgaagcagct
gctgccgcacttgcaactgtggaaaaagaaatcggtcgtactaccgatccagttcgcatg
tacatgcgtgaaatgggtactgttgaactacttacacgtgaaggcgaaatcgaaatcgcg
aagcgtattgaagaaggtatcaaccaagtacagatctcagttgctgagtacccagaagcc
atcacttatctgcttgaacagtgggataaatttgaagctgaagaaattcgccttagcgat
attatctctggtttctttgaccctgatgctgaagaaactcaaatctcggctacacacatc
ggttcagaattaagcgaagaagaacttgatgatgaagacgatgattcagatgatgaagac
gaagaagaagcagatacaggtcctgatcctgaagaagctcgcgaaaacttcgaaaaactt
cgcgaactttataatgctgcacgcgttatctttgaaacaaaaggtcgtgctcatcctgat
gcgcaagttgcaatcactgaaattggtgaccacttccgtactttcaagctagtacctaag
caattcgaccgcatggttaacaacatgcgtgaaatgatggacaaagtacgtgttcaagaa
cgtattgtcatgaagcaagtggtacaaatcgctaaggtaccgaagaaaacttttgttaag
cactttgctaacaatgaaactgatatggcttgggttgacgcagaaattgcggcaaacgaa
aagtattcagtaaaattacaagaggttaagcctgaagtagagcgctgcattaacaaactt
aaagcgattgaagaaagtacaggtttaacaatcgagcgcatcaaagacatcaaccgtcgt
atgagtattggtgaagctaaagctcgccgtgcgaaaaaagaaatggttgaagcgaactta
cgtcttgtaatttcaattgcgaaaaaatacaccaaccgtggcctacaattcttagacctt
atccaagaaggtaacattggtcttatgaaagcggttgataagttcgaataccgccgtggt
tataagttctcaacttatgcgacttggtggatccgtcaggcaattacacgttctatcgct
gaccaagctcgtacaatacgtattcctgtacatatgattgaaacgattaataaacttaat
cgtatttcacgtcagatgttacaagaaatgggtcgtgagccaagtcctgaagagttggca
gaacgtatgatgatgcctgaagacaagatccgtaaggtattaaaaattgcgaaagaacca
atctcaatggaaacgccaattggtgatgatgaagattcgcacttaggtgatttcatcgaa
gacaccacaattgagtctccaattgattcagcaacaatggaaagtcttcgtggcgcaaca
aacgaagtgttagcaggcttaacagctcgtgaagctaaagttcttcgtatgcgtttcggt
atcgatatgaatactgaccacacactagaagaagtaggcaagcagtttgacgtaacacgt
gagcgtattcgtcagattgaagctaaagcgcttcgcaagcttcgccacccttcacgctct
gacttattaaagagcttcttagacgttaaaggctaa
DBGET
integrated database retrieval system
