Pseudomonas phenolilytica: HU825_18255
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Entry
HU825_18255 CDS
T08532
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pphn
Pseudomonas phenolilytica
Pathway
pphn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU825_18255 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pphn03400
]
HU825_18255 (mfd)
Enzymes [BR:
pphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU825_18255 (mfd)
DNA repair and recombination proteins [BR:
pphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU825_18255 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UIP88378
LinkDB
All DBs
Position
3831011..3834448
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLAPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAF
FAPELSVLHFPDWETLPYDLFSPHQDIISQRIATLYQLPELSHGVLVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDIFPMGSAKPY
RIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWTDVRN
RYEERRVDPQRPLLPPGELFVPVEDCFARLKQWPRVVASQEDVEPGIGRERYPAQALPDL
AIEAKAGEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVEGWSGFLGS
DQRLAITIAPLDEGLLLDELALIAESPLFGQRVMQRRRREKGRGDGDNVIKNLTELREGS
PVVHIDHGVGRYQGLVTLEIEGQAQEFLLLQYADEAKLYVPVASLHLIARYTGSDDALAP
LHKLGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQGYAFKDPQVDYETFAAGFPFEE
TPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQSAIAELAEGKIDILIGTHKLLQDDVKFS
NLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPA
RRLSVRTFVMEANNPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIAIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGE
GQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPDDYLPDVH
ARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIVKIDAG
PQGGRIEFSADTSVDPLVLIKLIQSQPNRYKFEGATMFKFQVPMERPEERFNTLEALLER
LAPSA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcctgcgccttgcgcccctgcctgccgccagcggcaagcaacactggggcaac
cttcccggagccgcgctgagcctggccattgccgaagccgccagcaacgccaaacgcttc
accctcctgcttaccgccgacagccagagcgccgagcgcctgcaggaagagctcgccttc
ttcgcgcccgagctgtccgtgctgcatttccccgattgggaaacgctgccctatgatctg
ttctcgccacaccaggacatcatttcccagcgcatcgccacgctctaccaactgccggag
ctgagccacggcgtgctggtagtgccgatcaccactgccctacaccggctggcgcccaag
cgtttcctgctcggttcgagcctggtgctggacgtgggccagaagctcgacgtggagcag
atgcgtctgcgcctggaagccgcggggtaccgctgtgtggataccgtctacgaacacggc
gagttcgccgtgcgcggtgcgctgatcgacatcttcccgatgggcagcgccaagccctac
cgcatcgacctgttcgacgacgagatcgagacgctgcgcaccttcgacccggagaaccag
cgttcgatcgacaaggtcgagtcgatccgtctgctgccggcgcgcgagttcccgctgaag
aaggaagcggtcaccggctttcgcgcacgctttcgtgaacgcttcgacgtcgacttccgc
cgctgcccgatctatcaggatctttccaccggtatcaccccggcaggtatcgagtactac
ctgccgctgttctacgaagaaaccgccaccctcttcgactatctgcctgaggacagccag
gtattttcgctgcccgggatcgaacaggccgccgagcagttctggaccgatgtgcgcaat
cgctacgaggagcgccgcgtcgatccgcagcgcccgttgctaccgcccggcgagctgttc
gtgccggtggaggactgctttgcccgcctcaagcaatggccgcgcgtggtggccagccag
gaagacgtcgaacccggcatcggtcgcgagcgctatccggcgcaggcgttgccggacctg
gcaatcgaggccaaggccggcgagccgttgggcaagctgcgtcagtttctcgaaagctat
ccgggccgcgtgttgttcaccgccgagtccgccggccgccgcgaggtgctgctggaactg
ctcgcccggctgaaactgcgcccgcaggaagtcgaaggctggtccggctttctcggcagc
gaccaacggctggcgatcaccatcgccccgctcgatgaaggcttgctgctcgacgaactc
gcgctgatcgccgaaagcccgctgttcgggcagcgcgtgatgcagcgcaggcgccgcgaa
aagggtcgaggcgacggcgacaacgtgatcaagaacctcaccgagttgcgcgaaggctcg
ccggtggtgcacatcgaccatggcgtcggccgctatcaggggctggtcacgctggagatc
gaaggccaggcgcaggaattcctcctgctgcagtacgccgacgaagccaagctctatgtg
ccggtcgccagcctgcacctgattgcccgctacaccggcagcgacgacgccctggcgccg
ctgcacaagctcggctcggaaacctggcagaaagccaagcgcaaggccgccgagcaggta
cgcgacgtggctgcagaactgctcgacatctacgcccgtcgcgccgcacgccagggctat
gccttcaaggacccccaggtcgactacgagaccttcgccgccggcttccccttcgaggaa
acaccggaccagcaggccgccatcgatgcggtgcgcgaggacctgctctcggccaagccg
atggaccgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggccatgcgtgcc
gccttcatcgccgtgcatggcggcaagcaggtcgcggttctggtgcccaccacattgctc
gctcagcagcactacaacagcttccgcgaccgcttcgccgactggccagtgcgcgtcgag
gtgatgagccgcttcaaatcggccaaggaggtgcagagcgccatcgcggagctggccgaa
ggcaagatcgacatcctcatcggcacccacaaactgctgcaggacgacgtcaaattcagc
aacctggggctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggagcag
ctcaaggcactgcgcagcgaagtggacatcctcacgctgaccgccacgccgatcccgcgc
acgctgaacatgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccgccggcg
cgccggctgtcggtgcgcaccttcgtcatggaagccaacaacccgaccatcaaggaagcc
ctgctgcgcgagctgctgcgcggtggtcaggtctactacctgcacaacgacgtgaaaacc
atcgagaagtgcgccgccgacctcgccgagctggtgccggaggcgcgcatcgccatcggc
cacggacagatgcgcgagcgcgatctcgaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgccgagcgccaac
accatcatcatcgagcgtgccgacaagttcggcctcgctcagctgcaccagctgcgcggc
cgcgtcgggcgcagccaccaccaggcctacgcctacctgctgaccccgccgcgcaagcag
atgaccgacgacgcgcagaagcgcctggaggccattgccaacgcccaggacctcggcgcc
ggcttcgtcctggccacccacgacctggaaatccgcggtgccggcgaactgctcggcgaa
ggccagagcggacagatccaggccgtcggcttcaccctctatatggaaatgctcgagcgc
gcggtcaaggccatccgcaagggcgagcagccaaacctcgagcagccactcggcggcggc
ccggagatcaacctgcgcctgccggcgctgatccccgacgactacctgccggacgtgcat
gcgcggctgattctctacaagcgcattgccaatgccgccgacgaggatggcctcaaggaa
ctgcaggtggagatgatcgaccgcttcggcctgctgcccgagccgaccaagaatctggtg
cgcctgacgctgctcaagctgcaggccgagaagctcggcatcgtcaagatcgacgccggc
ccgcagggcgggcgcatcgagttctccgccgatacctcggtcgatccgctggtgctgatc
aagctgatccagagccagccgaaccgctacaaattcgaaggcgcgacgatgttcaagttc
caggtaccgatggaacgcccggaagagcgcttcaacaccctcgaagcgttgctcgaaagg
ctcgcgcccagcgcataa
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