Pannonibacter phragmitetus: APZ00_17605
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Entry
APZ00_17605 CDS
T04214
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pphr
Pannonibacter phragmitetus
Pathway
pphr03030
DNA replication
pphr03430
Mismatch repair
pphr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pphr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
APZ00_17605
03430 Mismatch repair
APZ00_17605
03440 Homologous recombination
APZ00_17605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pphr03032
]
APZ00_17605
03400 DNA repair and recombination proteins [BR:
pphr03400
]
APZ00_17605
Enzymes [BR:
pphr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
APZ00_17605
DNA replication proteins [BR:
pphr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
APZ00_17605
DNA repair and recombination proteins [BR:
pphr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
APZ00_17605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ALV28651
UniProt:
A0A0U3NBA4
LinkDB
All DBs
Position
3844179..3847622
Genome browser
AA seq
1147 aa
AA seq
DB search
MSANPGFVHLRVHSALSLLEGALPIKKLLDLAKADAQPALAITDTGNLFGAQEFAGKAWG
SGIQPIIGCQISVAFDEEGGDDRRGDPALFDVVLLAMSERGYGNLMELTSRAFLDTPTGQ
LPHVPQAYLESHAEGIILLTGGARGPIGKALLTGNRTLAQARLSRLAKSFDGRCYVELQR
HGMADERRTEAGFIDLAYDMGLPLVATNEAFFPKREDYEAHDALIAISEGRVISDEERRR
LTPEHYFKSRQGMIELFADLPEAVENTVEIALRCHYRPLKRNPILPRFAGADADPEEAEQ
AESAELKRQSREGLAERLRVHGLADGLTEKDYWDRLEFELSIIERMKFPGYFLIVADFIK
WAKAHDIPVGPGRGSGAGSLVAWALTITDLDPMRFSLLFERFLNPERVSMPDFDIDFCQN
RREEVIRYVQEKYGRSQVAQIITFGSLQARAVLRDVGRVLQMPYGQVDRLCKLVPANPAN
PVTLAQAIADEPRLREAAREEEVVERLLEMAQKLEGLYRHASTHAAGVVIGDRPLEQLVP
LYRDPRSDMPVAQFNMKMVEEAGLVKFDFLGLKTLTVIDTALKLIARKGIHIKIEEVPLD
DEKTYRLLAAGETVGVFQLESQGMRRAIAGMKPDRFEDIIALVALYRPGPMENIPVYNSV
KHGELEPDYLHPLLEPILKETNGIIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIAAE
MEVQRARFVDGAVERGVDKDQAGTIFDLVAKFANYGFNKSHAAAYALVSYHTAWLKANHP
VEFMAASMTLDLGNTDKLGDFRQEARRMRIEVMPPSINRSMVHFDVDEGRIVYAMGAIKG
VGEQAVQHIVDVRGDRPFRNLSDFASRISPKFLNKRTLESLVNAGAFDCIEPNRARVFEG
LDRIMGLAQRTESNATLGQNDMFGGAGAEEELQLPEVNGWLPAERLQREHAAIGFYLSSH
PLDEYAPLLERMRVQMWAQFSEAVKRGASAGRLAGTVISKQERKTKSGNRMGIVRFSDPT
GQFEALLFSEKLAQFRDVLEVGKSMVVLVNADMRDDEPSIRIEQVDPVEVMAARVQKSLR
VFLRDPRPLKSLSRHLGVKGEGEVNVVVLLDEGKREVEVRLPGRYRLSPEIAGALKAVPG
VTDVQLA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaatcccggtttcgttcacctgcgcgtccattcggccctgtcgctgctggaa
ggcgcgctgccgatcaagaagctgctcgacctggccaaggccgacgcgcagccggcgctg
gcgatcaccgacacgggcaacctgttcggtgcgcaggagttcgccggcaaggcctggggc
tccggcattcagcccatcatcggctgccagatctccgtcgcctttgatgaggagggcggc
gatgaccgccggggtgatccggcgctgtttgacgtcgttctgctggcgatgagcgaacgc
ggctacggcaacctgatggagctgacgagccgggccttcctcgacacgcccacgggccag
ctgccgcatgtgccgcaggcctatctcgaatcgcacgcagaaggaatcattctgctgacc
ggcggcgcgagaggccccatcggcaaggcgctgctgaccggcaaccgcacgctggcgcag
gcgcggctttcccggctggcgaaatccttcgacgggcgctgctacgtggagcttcagcgc
cacggcatggccgacgaacggcgcacggaagccgggttcatcgatctggcctatgacatg
gggctgccgctggtcgccaccaacgaggcgttcttccccaagcgcgaggactatgaagcc
catgacgcgctgatcgccatttccgaaggccgggtgatctccgacgaggaacggcggcgg
ctgacgccggagcattatttcaagtcccggcaggggatgatcgagctgtttgccgatctg
ccggaggcggtggagaacaccgtcgagattgcactgcgctgccattaccggccgctgaag
cgcaacccgatcctgccgcgctttgccggggctgatgcggacccggaggaggccgaacag
gccgagtcggccgaattgaagcgccagtcccgcgaaggccttgccgagcgcctgcgcgtc
cacggccttgccgatgggctgacggaaaaggactactgggaccggcttgagttcgagctg
tcgatcatcgagcggatgaagttccccggctacttcctcatcgtggccgacttcatcaaa
tgggccaaggcgcatgacattccggtggggccgggccgtggttcgggtgcaggctcgctg
gtggcctgggcgctgaccatcaccgatctcgaccccatgcgcttctcgctgctgttcgag
cgcttcctcaacccggaacgtgtgtcgatgccggacttcgacatcgacttctgccagaac
cggcgcgaagaagtgatccgctatgtgcaggagaaatatggccgcagccaggtggcgcag
atcatcaccttcggttcgctgcaggcccgcgccgtgctgcgtgacgtcgggcgcgtcttg
cagatgccctatggccaggtggaccggctgtgcaagctggtgcctgccaatccggcgaac
ccggtaacgctggcgcaggccatcgccgacgagccgcgcctgcgcgaggcggcccgcgag
gaagaggtggttgagcgccttctggaaatggcgcagaagctggaagggctgtaccgccac
gcctccacccacgccgccggtgtggtgatcggcgacaggccgctcgaacagctggtgccg
ctctaccgcgatccgcgctccgacatgccggtggcgcagttcaacatgaagatggtggaa
gaagccgggctggtgaagttcgacttcctcggcctcaagacgctgaccgtcatcgatacg
gcgctgaaactgatcgcgcgcaagggcatccatatcaagatcgaggaagtgccgctggat
gacgagaagacctaccgtcttctggccgccggtgaaacggtgggcgtgttccagctggaa
agccagggcatgcgccgcgccattgcgggcatgaagccggaccgtttcgaggacatcatt
gcgctggtggcgctctaccggccgggcccgatggagaacattccggtctacaactcggtc
aagcatggcgagctggagcccgattacctgcatccgcttctggaaccgatcctgaaagag
acgaatggcatcatcgtctatcaggagcaggtgatgcagatcgcccaggtgctctccggc
tactcgcttggcgaagctgaccttctgcgccgcgccatgggcaagaagatcgccgccgag
atggaggtgcagcgcgcccgtttcgtcgatggtgcggtggagcgcggcgtcgacaaggat
caggccggcacgatcttcgaccttgtggccaagttcgccaactacggcttcaacaagtcg
cacgcggcagcctatgcgctcgtttcctatcacacggcctggctcaaggcgaaccacccg
gtggagttcatggccgcgtccatgacgctggatctgggcaacacggacaagctgggcgac
ttccgccaggaagcccggcgcatgcggatcgaggtgatgccgccgtcgatcaaccgctcc
atggtgcatttcgacgttgatgagggccgcatcgtctatgccatgggcgccatcaagggc
gtgggcgaacaggcggtgcagcatatcgtcgatgtgcgcggtgaccggcctttccgcaat
ctcagcgactttgccagccgcatttcgccgaagttccttaacaagagaacgctggaaagc
cttgtcaacgcaggggcgtttgactgtatcgagccgaaccgcgcccgggtgttcgagggg
ctggaccgcatcatggggctggcgcagcgcaccgaatccaacgcaacccttggccagaac
gacatgttcggcggggcaggggctgaggaagaactgcagctgccggaggtgaacggctgg
ctgccggcggagcggctgcagcgcgagcatgcggccatcggcttctatctgtcgtcccat
ccgctcgatgaatatgcgccgctgctggagcgcatgcgggtgcagatgtgggcgcagttc
tccgaggccgtgaagcgcggtgcgtcggcggggcggcttgccggaaccgtgatctccaag
caggagcgcaagaccaagtccggcaaccgcatgggcatcgtgcgcttctctgatcccacc
ggccagttcgaggcgctgctcttctccgaaaagctcgcccagttccgcgacgtgctggaa
gtcggcaagtcgatggtggtgctggtcaacgccgacatgcgcgatgacgagccctccatc
cgcatcgagcaggtggatccggtggaggtgatggcggcccgcgtgcagaagagcctgcgc
gtcttcctgcgcgacccgcgcccgctcaagagcctgtcgcgtcacctcggcgtcaagggc
gagggggaggtgaacgtggtcgtgctgctggacgagggcaagcgcgaggtggaagtccgt
cttccgggccgctaccgcctgtcgccggaaatcgccggtgcgctgaaggccgtgccgggc
gtcacggacgtgcaactggcctga
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