Paenibacillus polymyxa SC2: PPSC2_24015
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Entry
PPSC2_24015 CDS
T01335
Symbol
uvrB3
Name
(GenBank) ATP-dependent helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
ppm
Paenibacillus polymyxa SC2
Pathway
ppm03022
Basal transcription factors
ppm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PPSC2_24015 (uvrB3)
09124 Replication and repair
03420 Nucleotide excision repair
PPSC2_24015 (uvrB3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppm03021
]
PPSC2_24015 (uvrB3)
03400 DNA repair and recombination proteins [BR:
ppm03400
]
PPSC2_24015 (uvrB3)
Enzymes [BR:
ppm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PPSC2_24015 (uvrB3)
Transcription machinery [BR:
ppm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PPSC2_24015 (uvrB3)
DNA repair and recombination proteins [BR:
ppm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PPSC2_24015 (uvrB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
ResIII
Helicase_C
preSET_CXC
Motif
Other DBs
NCBI-ProteinID:
ADO59058
UniProt:
E3EBT4
LinkDB
All DBs
Position
complement(5395538..5397910)
Genome browser
AA seq
790 aa
AA seq
DB search
MTGTGDRMKEPIHISVRPLVEYVHRSGSIQSGFRSNSSMQEGTRVHQVIQKGYKEHDRKE
VHLRTEISYEGKLFIIEGRCDGLIELDGVWTVDEIKSISQPLEDIQGDGHPVHWAQAFLY
AYMIAREEQHHSMQVQLTYVQSHSEDIRRFRRMLSFAELEAFTQEMIAGYAPYAFLLRAH
AEKRDASIAILDFPFDTYRSGQRTLAGSVYKTIAEGVNLFAKAPTGIGKTVSTLYPAIKA
IGEGLARRVYYVTARTTTRAAAEEAYARMQAQGLHMHVVTLTAKDKICFKDEHDCDAGSC
SMCEGYYDRINGAVSDILANETLMTRAVIEHYARKHKVCPFEFSLDVAYASDGIISDYNY
VFDPRISLKRLLEEHKRKGVVLVDEAHNLVERGRDMFSAEILKSSFLELKREFKLLSPEV
AKTASAVNAHMITLRKLHADTGKAVETAAPQEVLELLVPFVEAAERELVMGNSTSRASSE
STAYALLLDTYFTAQNMLRIAALYDERYVTYSEAGRSEVRIKLFCLDPSHLLGQAVKNYR
STIYFSATLTPLAYYRDMLGASEEDYTLQVPSPFHQEQWDVRLLPLSIRYRDRERSKGAI
ADMLAGLVAERKGNVLVFFPSYPYLREVYEEFMLRDVSADTLVQSPGMTEPERDRFLEAF
QPGQERTLLGFAVLGGVFAEGVDLPGDRLNGVVVVGVGLPQIGAERDVLRDYFSEQGRNG
FNYAYVYPGMNKVLQAGGRLIRTEHDEGLLVLVDDRFAKEPYASLLPDEWKSYRLMEQAG
LRKEWMDYEF
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaacgggtgatcgtatgaaggaaccaattcacatttcggtgcgtccacttgtg
gagtatgtgcatcgaagtggcagcattcagagcggctttcgttcgaatagcagtatgcag
gaaggaactcgcgtacatcaggttatccagaaaggttataaggagcatgaccgtaaagag
gtacatttacgtacagaaatttcatatgagggcaaattgtttatcatcgaaggccgctgt
gacggactgattgagctggatggcgtatggacggttgatgaaattaaatcgatctctcag
cccctcgaagatattcagggggacggccaccccgtgcactgggcacaagcatttctgtat
gcctatatgattgctcgtgaggagcagcatcattccatgcaggttcaacttacttatgta
caatcacacagtgaagacattcgtcgcttcagacggatgctatcttttgcagaactggaa
gctttcactcaggagatgattgctggttatgcaccgtatgcattcctgctgagagcacat
gcggagaagagggatgccagtattgctatattggactttccttttgacacatatcgttca
ggtcagcgaactctagcgggttcggtgtacaagacgattgccgaaggggttaacctgttt
gccaaagcacccacaggtatcggtaaaacggtatccaccttgtatcctgcgattaaggcg
atcggcgaaggactggctaggcgagtatattatgtaacggctcgtaccaccactcgggca
gcagctgaagaagcttatgcccgaatgcaggctcaagggctgcacatgcatgtggtaacg
ttgacggcgaaggataaaatttgctttaaggatgaacatgattgtgatgctggatcatgc
agcatgtgcgagggctattacgaccggatcaacggtgcagtatccgatattttggcgaat
gagacgttaatgacgcgggcggtgattgagcattatgcgcgcaagcataaggtatgtccc
tttgaattttcgctagatgtggcgtatgcctcggatggtataatcagtgattataattat
gtttttgatccacggatttctttgaagagattgctggaagagcacaagcgaaaaggtgtt
gtgctggtggatgaggcgcataatctggtggaacgcggtcgggacatgttttcggcggaa
atcctgaaatcttcttttttggaactgaaaagagaatttaaattgctaagcccggaggtt
gctaagactgcgagtgcagtgaacgcacatatgattacgctgcgcaagctgcatgcagat
acaggaaaagcagtggaaacagcagcaccgcaagaggtgctggagttattggtgcccttt
gtggaggccgctgaacgtgaactggtgatggggaacagtacaagtcgcgcaagcagtgaa
agtacggcctacgcattgcttttggatacgtattttaccgcccaaaatatgctgcgaatc
gctgctttatacgatgaacgttacgttacttattctgaagcagggcgcagtgaggtgagg
atcaaactgttctgcctcgacccttcgcacttgctgggacaggctgtaaagaactatcgc
tcgactatttatttttcggcgacgttgacaccgcttgcttattaccgggacatgcttgga
gcaagcgaggaagactatacgttacaggtcccttcccctttccatcaggagcaatgggat
gtacgtctgctgccgctctccatccgttatcgggatcgtgagcgttctaaaggggcgatt
gcggatatgctggctggattggttgcggagcggaaagggaacgtcctcgtgtttttcccg
tcttatccgtatctgcgagaggtatacgaggagttcatgcttcgggacgtgtctgcagat
acattggtacaaagtccgggtatgaccgaaccggagcgtgatcggttcctagaggccttc
caacctgggcaagagcgcaccctgctcggctttgccgtactaggtggtgtctttgctgaa
ggtgtcgatttacctggggatcgcttgaacggggtagtggtcgtcggggtcggcttgccg
caaattggagcggagcgggatgtgctgcgggattatttttcggaacagggacgaaatggt
ttcaactatgcgtatgtatatccggggatgaacaaggttcttcaggcaggtggcagactt
attcgcacagagcatgacgaggggctgctggtcctggtagatgatcgttttgccaaggag
ccatatgcctctttactgccagatgagtggaaaagctaccgtttgatggaacaagcggga
ttaaggaaggaatggatggactatgaattttaa
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