Paenibacillus polygoni: QPK24_05175
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Entry
QPK24_05175 CDS
T09587
Name
(GenBank) RNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppog
Paenibacillus polygoni
Pathway
ppog03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QPK24_05175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppog03400
]
QPK24_05175
Enzymes [BR:
ppog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QPK24_05175
DNA repair and recombination proteins [BR:
ppog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QPK24_05175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WIV20110
LinkDB
All DBs
Position
complement(1086049..1087008)
Genome browser
AA seq
319 aa
AA seq
DB search
MKLTPVIPFEPVRTERFPSGHPWIAQVKWDGVRMLTYYDGEEVRLVNRKRNDRTIQYPEL
GQADVYSSASSFILDGELIAFAGGKPSFHEIMRRDSLRSERSIRQGLRSVPVTYMVFDLL
YLNGEWITHLPLSERQERLNQIIKPQPLVQLVKNFPDGNALFEATKAQQLEGVVVKDLTS
TYALGGKDNRWQKRKKNGDLYAVIGGVTLRDNIVNSLLVGLYREDGVLSYIGHAGTGRFT
AQEWRDLTDRIQPLLTCEMPFDHLPGRYQEALWIRPEIVVRITFLEWTPGGTMRHPTIES
FAPHIQPKDCTLSQKEEDS
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttacacccgtcattccttttgaaccggttcgaaccgaacgattcccttcagga
catccctggattgctcaggtaaaatgggacggtgttcgaatgcttacttattatgatggt
gaggaagtacggctcgtgaaccgcaagcgaaacgatcgaacaatacaatacccggaactt
ggtcaggcggatgtatattcatccgcttcttcttttattttggatggagaactcatcgcg
tttgcgggcggtaaaccttcttttcatgaaatcatgcggcgggacagcctgcgaagtgaa
cgaagtataaggcaaggattacgaagtgtacctgttacctatatggtgtttgatcttctc
tatctgaatggagaatggatcactcatcttccgctctctgaacgccaggaacggctaaac
cagatcattaaacctcagcctcttgtacagcttgtgaagaacttcccggatggaaatgct
ctctttgaagcgacgaaagcgcagcaacttgaaggggttgtagttaaggatttgacgagt
acctatgcgctgggcggtaaagataatcgctggcagaagcgcaagaaaaacggtgatctc
tatgcggtgattggcggcgttacgctacgtgacaacatcgtaaactctctgcttgtcgga
ttataccgtgaggatggagtgctttcctacattggtcatgcgggaaccggaagattcaca
gctcaggagtggcgggatcttaccgatcgcattcagccccttctcacctgcgaaatgcct
tttgatcatttgcctggtcgatatcaagaagcactctggattcgtccagagatcgtcgtt
cgcatcacctttctcgaatggacacctggggggacgatgcgtcatccaactatcgaaagc
tttgctcctcatatccagccaaaggactgtactttatcacagaaggaggaagattcgtaa
DBGET
integrated database retrieval system
