Paenibacillus polymyxa Sb3-1: RE92_11250
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Entry
RE92_11250 CDS
T03812
Name
(GenBank) peptidase M15
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
ppoy
Paenibacillus polymyxa Sb3-1
Pathway
ppoy00550
Peptidoglycan biosynthesis
ppoy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ppoy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RE92_11250
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ppoy01002
]
RE92_11250
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ppoy01011
]
RE92_11250
Enzymes [BR:
ppoy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RE92_11250
Peptidases and inhibitors [BR:
ppoy01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RE92_11250
Peptidoglycan biosynthesis and degradation proteins [BR:
ppoy01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RE92_11250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
Beta-lactamase2
PBP5_C
Beta-lactamase
Pilin
X-Tfes_XVIPCD
DUF4296
Motif
Other DBs
NCBI-ProteinID:
AJE51569
LinkDB
All DBs
Position
complement(2544964..2546352)
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AA seq
462 aa
AA seq
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MKANNFKKNNKRSMIKKSVTAVMVLNMMYMSALPVVGNFDSSVATFAAGAATEATNITGT
GSINPPSLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYLVAEQVKQGKLKWTD
KVTVNENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLM
NETAQKMGMKNTYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLASYIIKDHPDYTR
FTTIQSYKFRPTDKAPIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTSNAGNCFTGTA
ERNGMRLISVVMGADSEPHRFTETAKVLNYGFDNFEVKQVVAPKTVVKGVENVPVTKGTE
TEVPIVTKDAVSFIVPKGASNPKVTFTTNITPASSLVAPLKQGAKVGTITYTYKTDGVDK
GQTKTVDLVTTTAVEEGGWFRMLFRAIGDFFGDLFQGIKNLF
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagcgaacaattttaaaaagaataataaacgcagcatgattaaaaagagtgtgact
gcagtcatggtgcttaatatgatgtatatgtcggccttgcctgttgtaggcaatttcgat
tcaagcgtggctacttttgctgctggagcggcaacagaggcaacgaatatcacgggaaca
ggttccattaacccccctagtctggcacttcgttcggccattttgattgagccttccact
gggcaggttttgctctctatgaatccagatgagccgcttccgccagccagtatgaccaaa
atgatgacagagtacctcgtagcggagcaggttaagcaaggaaaacttaagtggacggat
aaggttacggttaacgagaatgcttctaagagtatcggatcacgtatttttttggctcaa
ggggatcaacatacggtagaagagctttatattgccatggcagtaggttctgccaatgat
gccacagtagctcttgctgaacgcgtatctggaaccgagcaggattttgtaaaactaatg
aatgaaactgctcagaaaatgggtatgaaaaatacgtattttatcaactcgactggcttg
gatcgtaaggatatgcctacagggtttcaaccggatacagaccgggaaactgtgatgaca
gcgagagacgcagctactctggccagttacatcattaaggatcatccagattatacacgg
tttaccacaattcaatcgtacaaatttcgaccgactgacaaagcgccaattattaactat
aattggatgctagaagcaaacaaaaatattactaactttagaaaatttgcttatcctggc
ttggacggtatgaaaacgggccatacgagcaatgctggaaactgttttacaggtacggct
gagcgtaatggaatgcgtctcattagtgtagttatgggagcagattcagagcctcatcgt
tttacagagacggctaaagtactgaactatggctttgataactttgaagtgaagcaggtt
gttgctccaaagacggtggttaagggcgttgagaatgtgcctgtaaccaaaggtacggaa
acagaagtgccgattgtcacaaaagatgcagtaagttttatcgtacctaagggtgcaagc
aatcctaaggtaacctttacaacgaacataacaccagcaagctctctcgtggcacctttg
aaacaaggggctaaagtcggtacgattacgtacacatacaaaacggatggcgtggataaa
ggccagacgaaaactgttgatttggttacaactacggcagtagaagagggcggttggttc
cgaatgcttttccgggcaattggtgatttcttcggcgatttgttccagggaattaagaat
ctcttctaa
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