Physcomitrium patens (spreading earthmoss): 112281644
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Entry
112281644 CDS
T01041
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ppp
Physcomitrium patens (spreading earthmoss)
Pathway
ppp03020
RNA polymerase
ppp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112281644
09124 Replication and repair
03420 Nucleotide excision repair
112281644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppp03021
]
112281644
03400 DNA repair and recombination proteins [BR:
ppp03400
]
112281644
Enzymes [BR:
ppp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112281644
Transcription machinery [BR:
ppp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
112281644
DNA repair and recombination proteins [BR:
ppp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
112281644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
112281644
NCBI-ProteinID:
XP_024374168
LinkDB
All DBs
Position
4:complement(11164208..11170621)
Genome browser
AA seq
1268 aa
AA seq
DB search
MADLNSWAMDSLSGLNDVRKDTPMEDFEDLDVLEEELSHVNPPANDLEGFEDDAPRASSP
IVIDDFEPTQMQIDPTANFDPPELKYVKEEPIVERVDCGGKKRMTEQEEEEEARWAVAKM
FFDHRSLVENQLQSFNQFLGKEMQQMFKEALPVEVVPDHSPASVRISGLPRYARFWYGAV
TVGTPDTFTDDEKKVTKVLYPREARLRNMTYSAPINLEINLEIYQTHVKSNQQEKVVLQT
MSEDVCIGRIPIMVKSKYCNLSGLADTKLKRKEECAFDIGGYFIIKGSEKVLIAQEERCD
QRVYVQYFKKKNTWLATCAPSHKGFFNYRSKSPVRLVTDKNMSTLDMTLPRVSVPIPAVI
IMRALGFCSDKEFMEMVCYDLSDLHLMELIRPSILAADEYMVKFLKSKNSTSKTAMQAVR
QQDNALAYIGSKMTNNVKPDEECGRDVLNLMFHHIGQGYKQKAYFLGYMIRQICLARLGR
CPEDDKEHYKNKRLDLAGQLLRHQFRAAMAHLQRDMQKQLQKHLGKEDSLGSIKTFVQES
IITKNLQGAFTLGNWNTSEGQRSSGVVGDIKRTNTIAMISHLRQLRLNLPPKSRPTESAR
HPNFSYWARVCPVQTTDGDDCGLVKNISLTGILSSNTEEEPLMAILLDHGMRYLEEILPS
SLADTDKVFLNGKWVGTLDNSQDLVNILRAHRRKGAVHEETEVVKDDHLKEVRIYTDGGR
ILRPLLVVQNQCLVLSKRHLKKINMDMKTGKTAKECWQALLADGVVEYLGVEEEEGAMVA
LGSDDLAKARGCDGALVYSHCEIDSSYLMGLGASTIPFLEHNQASRNLFQSDKHCKQAIG
LYTTNFQSRADASASHLFYPQKPLVTTRAASILQKPELYSGQTVIVAILCYGYNQEDSIV
MNQASVDRGLFRSAHYKTYKGEEKKNIQEQFSKPSTSDVKGWYNKSLDKVEGDGFPCLGE
KLVKGDIVIGKVTSEVHNPRQVDSSTHLKVHQKGHVDQVMLSSEEDGHRIAKVRLRVTRA
PQAGDKFSSMHGQKGVIGALFPQEDLPFTQQGIVPDIIMNPHALPSRQTVGQILECLLGK
AIAASGKRRYAIPFSGIDNAEAINQYLHEAKLARGGCEFMSNGTTGQRLKVLVTIGPTFY
QRLEHMAEDKIKYRGNTGPVNLLTRQPVKDRNSLGGLKFGEMERDCMLGHGASATLRERY
FLLSDPYKMYICQSCRRPATMDSSRIPKCQFCKNGKRIVQVQIPYACKLLWQELLSMGIC
VYMDTKKC
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttaaattcgtgggcaatggatagtttaagtggtttgaacgatgttcgaaaa
gatacccctatggaagacttcgaagatctagacgttctggaagaggaattatctcatgta
aacccacccgccaatgaccttgaggggtttgaagatgatgcgcctcgtgcaagctccccc
attgtcattgatgattttgagcccacacagatgcaaattgaccctactgcaaatttcgat
cctccagagctgaaatatgtgaaagaggagcctatagtggaacgggtcgactgtggcggt
aagaagagaatgaccgaacaggaagaagaagaagaagcgcgctgggctgttgcgaagatg
ttctttgatcatagaagtctggtggaaaaccagctacagagctttaatcaatttttggga
aaggaaatgcaacaaatgttcaaagaagctctgccagttgaggttgtaccagatcatagt
ccggcttcagtgaggatctcagggctaccaaggtatgcccggttttggtatggtgcagtt
accgttggaacaccggatacattcacagatgatgagaagaaggtgactaaagttctgtat
cccagagaggcgcgtcttcgaaacatgacctactccgcaccaattaatcttgagataaat
ctggagatttaccaaacacatgtgaagtcgaatcagcaagagaaggtagtgcttcagaca
atgagtgaggatgtctgcattggtaggataccaattatggttaaaagcaaatactgcaat
ctttccgggttggctgacacgaaattgaagaggaaggaagagtgcgcttttgacattggt
ggatactttattatcaaaggttctgaaaaggtgctaatcgcgcaggaggaaagatgtgat
cagcgagtttacgtacagtattttaaaaaaaaaaacacctggttagccacatgtgcccct
tcgcataagggattcttcaattatcgtagcaagtcaccagtgaggcttgtcactgataaa
aacatgtcaactctcgatatgaccctccctcgtgtatcagtcccaattcctgctgtaatt
atcatgagggcattgggtttttgctcagataaggagttcatggagatggtgtgctacgat
ttatctgacctgcacttgatggagctgattcgaccatctattctagctgcggatgagtac
atggtcaagttcttgaagtcaaagaactcgacatccaagacggcaatgcaagccgtgcgc
caacaggacaatgctttggcttatattggttcaaagatgacaaacaatgtcaaacctgat
gaggagtgtggtagagatgttcttaacctcatgttccatcacattgggcagggttataag
cagaaggcgtattttttggggtacatgattcgtcaaatatgtttggcacgcttaggtcga
tgtcctgaagatgataaggagcactacaagaataaacgtctcgatcttgcgggtcaactc
ttgcgacaccagtttcgagcagcaatggcacatctccagcgggacatgcagaaacagttg
cagaagcacctgggcaaagaggacagcttaggctcgataaaaaccttcgtccaggagtct
ataatcactaaaaacctgcaaggtgcttttactctgggaaattggaatactagtgaaggt
caacgtagctcgggtgttgttggtgatatcaagaggacgaacactattgcaatgatatca
catctacgccagcttcggctgaacctgcccccgaagagcagacctactgagtctgcgcgt
catccgaacttctcatactgggcaagagtgtgccctgtacagacaactgatggagatgat
tgtggactggttaagaatatttcactcacaggaatcctgagttccaacacagaggaagaa
ccactgatggctattcttttggatcacgggatgcgatatttggaagagatactaccgtct
tcattggctgacactgacaaggttttcctgaatggcaaatgggtcggcacattagataac
tcccaagatcttgtgaatatacttagagcacacaggcgaaaaggagccgttcatgaggag
acggaagttgtgaaggatgaccatctaaaagaggtccgtatctacacagatggtgggcga
atcttgcggccactcctcgtggtgcaaaatcaatgcctggtgctatctaaacgccatctg
aagaagatcaacatggatatgaaaactggaaaaactgcgaaagaatgttggcaggcgttg
cttgcagatggtgttgtagaatatctcggagtggaggaagaggagggagcaatggttgca
ttgggatctgatgacttagcgaaggctcgtggttgtgatggtgctcttgtttactcgcac
tgtgagatcgattcgtcatacttgatggggctaggtgcctccacaatacctttcttggaa
cacaatcaggcttctagaaacctgtttcagtccgacaaacactgcaaacaagctattggc
ttgtatacgacaaacttccagtcgagagctgatgctagtgccagccatttgttttatcct
cagaaaccgttggtgacgacgcgagctgccagcatattgcaaaaacccgagctttatagt
ggccagacggtaattgtagctattttatgctacggctataatcaggaagattcaatagtt
atgaaccaagcctctgttgatcgaggcctgttcagatctgcacattataagacttacaag
ggtgaagagaagaaaaacatacaggagcagttttccaagccaagcacctctgatgtgaaa
gggtggtacaataagagcttggacaaagtagaaggcgatggatttccttgtttaggggag
aaacttgtgaaaggtgatatcgtaattgggaaggtaacgtcagaggtacataacccaaga
caggtggacagtagtacacacctcaaagtacatcagaaggggcacgtggatcaagttatg
ctcagttctgaggaagatggacaccggatagctaaagttcgacttcgggtgactcgagct
ccacaggcaggtgacaagttttcaagtatgcatgggcagaagggagtcattggggctctt
tttcctcaagaggacttgcctttcacgcagcaaggaattgttccagatatcattatgaac
cctcatgctcttccgagcaggcaaactgtgggtcagatattggagtgcttgcttggcaag
gccatagctgcgagcggaaagcgccggtatgcaatacctttctctggaattgacaacgcg
gaggccataaatcagtacttacacgaagcaaagcttgcaagagggggttgtgaatttatg
tccaacggtacaactggtcagagattgaaagttttagttacgatagggccgactttttac
cagagacttgagcatatggctgaggacaaaatcaagtacaggggtaacacgggacccgtg
aacttactcacacgacaacccgtgaaagatcggaactctcttggaggattgaaattcggc
gagatggagcgagattgcatgcttggacacggagcctcagcaacattgcgggagagatac
ttcttgcttagtgatccttacaaaatgtacatatgtcaatcatgtcgaaggcctgcaaca
atggactcttcccgaattcccaagtgccagttttgtaagaatggtaaacgcattgttcag
gttcagatcccttatgcatgtaagctgctttggcaagagctcttgagcatgggcatttgt
gtctacatggacaccaaaaaatgctag
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