Paenibacillus polymyxa SQR-21: PPSQR21_045520
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Entry
PPSQR21_045520 CDS
T03178
Name
(GenBank) RNA polymerase sigma-h factor
KO
K27000
RNA polymerase sigma-H factor
Organism
ppq
Paenibacillus polymyxa SQR-21
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppq03021
]
PPSQR21_045520
Transcription machinery [BR:
ppq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPSQR21_045520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
GerE
HTH_23
HTH_16
Sigma70_r4
Sigma70_ECF
HTH_38
HTH_29
UPF0122
HTH_28
Lebercilin
Terminase_5
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AHM68140
LinkDB
All DBs
Position
complement(5128749..5129393)
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AA seq
214 aa
AA seq
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MSVDLKDIMLSKFDYKNDEDIVGAVHEGDGEALEFLINKYRNFVRAKARSYFLIGADRED
IIQEGMIGLYKSIRDFKGDKLASFKAFAELCITRQIITAIKTATRQKHIPLNSYVSLDKP
IYDEESDRTLLDVICGTQVSDPEELIINQEEFVGLEDKMSEILSELERKVLMLYLDGRSY
QEIAEDLDRHVKSIDNALQRVKRKLEKYLEVRDS
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgtggacctcaaggatatcatgttgtcaaagtttgattacaaaaatgatgaagac
attgtcggagcagtccatgaaggtgatggggaagcgctggagtttctgattaacaaatat
cgaaactttgtgcgggccaaggccagatcctacttcctgattggggctgatcgcgaggat
attattcaggagggcatgattggtctctacaaatccatccgtgattttaagggagacaag
cttgcttcgttcaaggctttcgccgagttgtgcataacacgacagattattacggcaatt
aagacggctacacgacaaaagcacattcctctgaactcttacgtatctctggacaagccc
atctatgatgaagagtcagaccggacgttgctcgatgtgatttgcggaacacaagtaagt
gatcctgaagagctgattatcaatcaggaagagtttgtgggtcttgaggacaaaatgtcc
gagattctgagcgagctagaacgcaaggtacttatgttgtatctggacggtcgttcgtat
caggagattgctgaagatctagatcgtcatgtgaaatccattgataacgcgctgcaacgg
gtcaaacgtaaacttgaaaagtatctggaagtaagggatagttga
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