Pseudomonas promysalinigenes: HU725_007635
Help
Entry
HU725_007635 CDS
T07662
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pprg
Pseudomonas promysalinigenes
Brite
KEGG Orthology (KO) [BR:
pprg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprg03032
]
HU725_007635 (topA)
03400 DNA repair and recombination proteins [BR:
pprg03400
]
HU725_007635 (topA)
Enzymes [BR:
pprg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HU725_007635 (topA)
DNA replication proteins [BR:
pprg03032
]
Prokaryotic type
DNA Topoisomerases
HU725_007635 (topA)
DNA repair and recombination proteins [BR:
pprg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HU725_007635 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXI35198
LinkDB
All DBs
Position
1651936..1654548
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQDAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLGTAKSAK
VRFEVARENGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSSDALDMARSYIEREFGKQYLPDAPL
VYGSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV
TVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMAQGEVLKLLQLDPSQHFTKP
PARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLLNAESAEHGMRANQPTMT
NIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL
LGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCPGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPACKNTRKLLKNGEAAPPKMDKVDMPELKCEKVDDTYVLRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTK
EQYVQSEVDGKPTGWKAFYDGGAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctccccaccagc
ggttcggccagcgcaagcaaagagccggccgccaagcgtggcaaggctgctgcgggtgag
gctccggcgctgtcgccgaaagaaaaggcgcgtcgccagttggtagcgcgcatgggtgtc
gaccctgatcacggctggaaggccaaatacgagatccttcccggcaaggagaaggtgatc
gaagagctccgccgcttggccaaggatgccgacaccatctatctcgcaaccgacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggtgacgacacccgt
tacaagcgcgtggtgttcaacgaaattaccaagaaggcgattcaggatgcgttctcgcag
cctggcgagctggacatcgatcgtgtcaacgcccagcaggcgcggcgcttcctcgaccgc
gtggtgggctacatggtttcgcccctgctgtgggcgaagattgcccgcggcctgtcagcc
ggccgtgtgcaatcggtggcggtgaaactggtggtggagcgtgagcgcgagattcgcgcg
ttcgtccccgaagagtactgggaagtgcatgctgatctgggtaccgccaagagcgccaag
gtgcgtttcgaagtggcccgtgagaatggcgaggccttcaagccgctgaacgaagcgcaa
gcgatggccgcgctggaaaaactcaaggcttccagctacagcgtggtcaagcgtgaagac
cgccccaccagcagtaagccgtcggctccgttcatcacctccaccttgcagcaggccgcg
agcaaccgcctgggctttggggtgaagaagaccatgatgatggcccagcgtctttacgaa
gcgggctacatcacttacatgcgtaccgactcgacaaacctgtcctccgatgccttggac
atggcgcgcagttacatcgagcgcgagttcggcaagcagtatctgccagacgcacccctg
gtgtatggcagcaaagaaggcgctcaggaagcgcacgaggcgattcgcccttccgacgtg
aatactcacccgtccaagctcagcggcatggagcgggacgccgagcggctgtatgagttg
atctggcgccagttccttgcctgccagatgccgcctgcgcagtacctgtccaccagcgtc
acagtggctgcaggcgacttcgagctgcgcgccaaaggccgtatcctcaagttcgacggt
tatacccgtgtgctgccacagcaaagcaagcctggcgaggacgatgtgctcccagagatg
gcccagggcgaagtgctcaaactcttgcaactcgatccgagccagcacttcaccaagccg
ccagcgcgcttcaccgaagctagcctggtcaaggaaatggaaaaacgtgggattggccgc
ccgtctacctatgccgcgatcatctccactattcaggaccgtggttacgtcactctgcac
aatcggcgcttctattccgagaagatgggcgacatcgtgaccgagcgcctgtcggaaagc
ttctccaacctgatggactacggcttcacggccgacatggaagagaacctcgacgatgtg
gcccagggcgagcgcgactggaagaacgtactggatgagttctacggtgacttcagtaag
aagctgctcaatgccgagtctgctgagcatggtatgcgtgccaatcagccgaccatgacc
aacattccgtgcaaggaatgcggtcggccgatgatgatacgcaccgcctctaccggcgtt
ttccttggctgttctggttatagcctgccgcccaaggagcgctgcaaagccaccgttaac
ctggtgcccggtgatgaaattgccgcggacgatgagggcgagtcggaatcgcgcgtgcta
ttgggcaagcaccgttgcccgatctgctccacggccatggatgcctacctgctggatgag
aagcacaagctgcacatctgcggtaataacccagattgcccaggctacgagatcgaagag
ggcagctaccgcatcaagggctacgaggggccgagcctggaatgcgacaagtgcggcagc
gaaatgcaattgaaaactggccgctttggcaagttcttcgggtgcaccaaccctgcctgc
aagaacacccgcaaacttctgaagaacggtgaggctgcgccgccgaagatggacaaggtg
gacatgccagagctcaagtgcgagaaggtcgacgatacctacgtgctgcgtgatggtgct
tcagggctgttcctggccgctagccagtttccgaaaaaccgtgaaacccgtgcgccgctg
gtgatggagatcgtgccgcacaagcacgagatcgatcctaagtaccacttcctgtgcgac
gcgccacagaaggacccagatggccgtcctgcggtgattcgctacagccgcaagacgaaa
gagcaatacgtgcaatccgaagtcgatggcaagccgacaggctggaaagcgttctacgac
ggtggagcttggaaggttgaagacaagcgctga
DBGET
integrated database retrieval system
