KEGG   Paenibacillus psychroresistens: EHS13_01510
Entry
EHS13_01510       CDS       T06328                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
ppsc  Paenibacillus psychroresistens
Pathway
ppsc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ppsc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EHS13_01510 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppsc03400]
    EHS13_01510 (mfd)
Enzymes [BR:ppsc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     EHS13_01510 (mfd)
DNA repair and recombination proteins [BR:ppsc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      EHS13_01510 (mfd)
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII Cas3-like_C_2 DUF6269 RecG_dom3_C AAA_22 DUF2288 DUF6827 Efg1
Other DBs
NCBI-ProteinID: QGQ93688
UniProt: A0A6B8RDZ6
LinkDB
Position
300249..303770
AA seq 1173 aa
MKQLIKAFSEDMDFQTIVSGFKSGMREQLVSGLSGSSRQVMISAMKEQLNQPIVILTHNM
FSAQKIAEDLIECLSAEEVLLYPAQELMLTEAAIASPELLAQRIDALSRLASGFRGIFIT
PFAGLRKLLPLSEIYTEAQIHISVGETLQVEDFLLKMTEIGYERVERVEAKGEMSVRGGI
IDVFPLTAETPYRIELFDVEVDSIRSFDVVDQRSIEKLTNLTILPCKEIIADQRRYKNAA
QHASELLQQQLEKMTDKQAKTKLKEEIGHEIAQLEQHHHFPSIYKYISLLYPERQTLLDY
VAKDSLLLIDEPARLLETSKQMERDEAELITNLLQEGKCLPSFVMAKTYDTLLHRKPFPT
LYLSLFLRQVPQTQPQNIVNFMCRSMQNFHGQMNLLKAEMDRWKKTGCTVLLLTNGDERM
ERIKRILQDYQIDEPILLNGNLQSGFELPSIRLVVVTEGELFTQKQRKVRKMDKKIENAE
RIKNYQELKVGDHVVHVNHGIGKYIGIGTLEINGMHKDYLHILYAGGDKLSVPIDQFDLI
QKYVGSEEKEPKVYKLGGSDWARVKSKVRSTVKDIADELIQLYAERQATTGYGFNPDTPY
QSEFEDLFPYDETRDQLRAIDEIKKDMEKPRPMDRLLCGDVGYGKTEVAIRAAFKASIDG
KQVAVLVPTTILAQQHYATFRERFSGYPIQIQVLSRFRSKKEQTETIKGIKKGTVDVVIG
THRLLSSDIQFKELGLLIVDEEQRFGVSHKEKLKRLKMDVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEHSFALAREAIERELAREGQVYYLFNRVQGIHQIAEQL
SMLVPDARVAVAHGQMPEQELERTILDFLEGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKILNEVAEKRLQAIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFDLYSQMLAQEIATRKAEMGGEAKVEAKPWSTLLELQI
DAYLPSDYIYDSMQKIEIYKKVVNLTTIEEVADLHEELVDRFGDLPAAVDNLLAVARIKV
YGSLYAIESISQKGDDYQIKIHTEQSGNIDGKKLVALSTQFEGRLKVIPGPHILIELRCK
NLAADQAVQLLERFLHGYQDVLKTKGELQNVAK
NT seq 3522 nt   +upstreamnt  +downstreamnt
ttgaagcaattaattaaagctttttcagaggatatggattttcaaacgatcgtttcaggg
ttcaaatcgggtatgcgggagcagctcgtttcagggttgtccggttcatcacgacaagtc
atgataagtgcaatgaaagagcagcttaaccagcctatcgtgattctcacacataatatg
ttctctgcccagaagattgccgaagatctaattgaatgtctttctgcggaagaagttctg
ttataccctgcacaagaattgatgttaacagaagcggctattgctagcccagagcttcta
gctcaacgaatcgacgcattaagtagattggcgagcggctttcgtggtatttttattacc
ccttttgccggattgaggaagctgcttcctctaagtgagatttacacagaagcacaaatc
catatttccgttggggaaactttgcaggttgaagatttcttattgaaaatgacggaaatc
ggctatgaacgagttgaaagagttgaagccaaaggtgaaatgagtgtgcgtggaggcatt
attgacgtatttccgctgactgcagagactccatatcgaatagagctttttgatgtagag
gttgactctatacgcagctttgatgttgtggatcagcgctcgatcgagaagttaactaat
ctaaccattcttccctgcaaagaaataatagccgatcaaagaaggtataagaacgcggca
cagcatgcatcggagctattgcagcagcaattagagaaaatgaccgataaacaagcgaag
actaagctaaaagaagaaattggccatgaaatagcgcagctggaacagcatcaccacttt
cccagcatttataaatacatttctttgttgtacccggaacggcaaaccttgctagattat
gtagctaaagatagcttgctcttgattgatgaaccagcgcgtttactggaaacctcgaag
cagatggagcgggatgaagctgaattaataaccaacctattgcaagagggtaaatgcttg
ccttcttttgtgatggctaaaacttacgataccctattgcatcgcaagccatttccgaca
ctctatctctcgcttttcttgcgtcaggtaccgcaaactcagccgcagaatatcgtaaac
tttatgtgccgctcgatgcagaatttccatgggcagatgaatttactcaaagcggaaatg
gaccgttggaagaaaacaggctgtaccgtattgctgctcactaacggtgatgagcggatg
gagcggattaagcgtattctgcaggattatcaaattgatgagcctattctgttaaatggc
aatttgcaaagcgggtttgagctgccttctattcggcttgttgttgtaaccgaaggggaa
ttatttactcaaaagcaacgcaaggttcggaagatggataaaaaaattgaaaatgcagag
cggattaagaattatcaagaattgaaggtcggcgatcatgttgttcatgtcaatcatggg
attggtaagtacataggcattggcaccttagaaatcaacgggatgcacaaggattacttg
catattctttatgcgggtggcgataagctgtctgtacctattgaccagtttgatttgatt
caaaaatatgtgggatcggaagagaaagagcctaaggtttataaattaggcggatccgac
tgggcacgggttaagagtaaggttcgttcaacagtcaaggatattgctgatgaattgatt
cagctctacgcggaacgccaagcaacaaccggttatggatttaatccggataccccttat
caaagtgagtttgaagacttgtttccatacgatgaaacaagagaccaattgcgcgccatt
gacgagatcaagaaagatatggaaaaaccacgtccgatggatcgtttattatgcggcgat
gtgggttatgggaaaacggaagtcgccatacgtgcagcttttaaagcttctattgatggc
aaacaagtcgctgtgcttgtacctactacgattctggctcaacagcactatgcaacattt
cgcgagcgattctccggttatccaatccaaatccaagtgctcagccgttttcgctccaaa
aaagagcaaaccgagacgatcaaagggattaaaaaagggacagtcgatgtcgtcatcggc
acacatcggttgctttccagtgatattcaatttaaagaattgggtttgctgatcgtagat
gaagaacagcgttttggcgtctcccataaagaaaaacttaaacggttgaagatggatgtg
gatgttctcactctaacagctacaccgatcccgagaactctgcatatgtctatgttaggt
gttagggatctgtccgtgattgaaacgcctccggagaatcgttttccggtgcaaacctat
gtcgtcgagcacagctttgctttggccagagaagcgattgagcgagagctggctcgcgaa
gggcaagtctactatttattcaatcgtgtccaaggcatacatcagattgcagagcagctt
tccatgcttgttcccgatgccagagtagctgtagcccacggtcaaatgcctgaacaagag
ctagagcgcacgattctcgactttctggaaggcgaatatgatgtcttggttagtacgagt
attattgaaacaggcgtggatatacccaatgtaaatacgctgattgttcatgatgcagat
aagatggggctgtcccaactctatcagctgcgtggacgtgtcggtcggtccaatagaatt
gcttatgcctattttacttaccaacgggataaaatattaaatgaagttgcggagaagcgg
ctgcaggcgatcaaagagtttactgagctgggttccgggttcaaaattgctatgcgagat
ttatctattcgcggagcaggtaatttattgggagcggagcagcatgggtttattgcttct
gttggctttgatctttattcgcaaatgctcgcacaagaaatcgccacgcgtaaagcggaa
atgggcggtgaagccaaggtagaagccaaaccatggagtacattgctagagctgcaaatt
gatgcctatttaccttcggactacatttatgatagtatgcagaagattgagatttataaa
aaagtagttaatttaacaactatagaagaagtggcggacctgcatgaggaattggttgat
cgattcggagatttgcctgcagcggttgataacttgctggcggttgcaagaattaaagtt
tacggatccttgtatgccattgaatcgataagtcaaaaaggggatgattaccagattaaa
atccatacagagcaaagtgggaatatcgatgggaaaaaactggtagcgctatctactcaa
tttgagggcagattaaaggtcattccaggtccacatatccttatagaattacgctgcaag
aatctagctgcagatcaagctgtccaattattggagagattcctgcacggctatcaagat
gtacttaaaacaaaaggagagttgcaaaatgttgccaaataa

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