Paenibacillus psychroresistens: EHS13_01510
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Entry
EHS13_01510 CDS
T06328
Gene name
mfd
Definition
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EHS13_01510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_01510 (mfd)
Enzymes [BR:
ppsc01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.-
EHS13_01510 (mfd)
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EHS13_01510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CarD_CdnL_TRCF
UvrB_inter
TRCF
Helicase_C
DEAD
ResIII
SNF2_N
DUF2288
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGQ93688
UniProt:
A0A6B8RDZ6
LinkDB
All DBs
Position
300249..303770
Genome map
AA seq
1173 aa
AA seq
DB search
MKQLIKAFSEDMDFQTIVSGFKSGMREQLVSGLSGSSRQVMISAMKEQLNQPIVILTHNM
FSAQKIAEDLIECLSAEEVLLYPAQELMLTEAAIASPELLAQRIDALSRLASGFRGIFIT
PFAGLRKLLPLSEIYTEAQIHISVGETLQVEDFLLKMTEIGYERVERVEAKGEMSVRGGI
IDVFPLTAETPYRIELFDVEVDSIRSFDVVDQRSIEKLTNLTILPCKEIIADQRRYKNAA
QHASELLQQQLEKMTDKQAKTKLKEEIGHEIAQLEQHHHFPSIYKYISLLYPERQTLLDY
VAKDSLLLIDEPARLLETSKQMERDEAELITNLLQEGKCLPSFVMAKTYDTLLHRKPFPT
LYLSLFLRQVPQTQPQNIVNFMCRSMQNFHGQMNLLKAEMDRWKKTGCTVLLLTNGDERM
ERIKRILQDYQIDEPILLNGNLQSGFELPSIRLVVVTEGELFTQKQRKVRKMDKKIENAE
RIKNYQELKVGDHVVHVNHGIGKYIGIGTLEINGMHKDYLHILYAGGDKLSVPIDQFDLI
QKYVGSEEKEPKVYKLGGSDWARVKSKVRSTVKDIADELIQLYAERQATTGYGFNPDTPY
QSEFEDLFPYDETRDQLRAIDEIKKDMEKPRPMDRLLCGDVGYGKTEVAIRAAFKASIDG
KQVAVLVPTTILAQQHYATFRERFSGYPIQIQVLSRFRSKKEQTETIKGIKKGTVDVVIG
THRLLSSDIQFKELGLLIVDEEQRFGVSHKEKLKRLKMDVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEHSFALAREAIERELAREGQVYYLFNRVQGIHQIAEQL
SMLVPDARVAVAHGQMPEQELERTILDFLEGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKILNEVAEKRLQAIKEFTELGSGFKIAMRD
LSIRGAGNLLGAEQHGFIASVGFDLYSQMLAQEIATRKAEMGGEAKVEAKPWSTLLELQI
DAYLPSDYIYDSMQKIEIYKKVVNLTTIEEVADLHEELVDRFGDLPAAVDNLLAVARIKV
YGSLYAIESISQKGDDYQIKIHTEQSGNIDGKKLVALSTQFEGRLKVIPGPHILIELRCK
NLAADQAVQLLERFLHGYQDVLKTKGELQNVAK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcaattaattaaagctttttcagaggatatggattttcaaacgatcgtttcaggg
ttcaaatcgggtatgcgggagcagctcgtttcagggttgtccggttcatcacgacaagtc
atgataagtgcaatgaaagagcagcttaaccagcctatcgtgattctcacacataatatg
ttctctgcccagaagattgccgaagatctaattgaatgtctttctgcggaagaagttctg
ttataccctgcacaagaattgatgttaacagaagcggctattgctagcccagagcttcta
gctcaacgaatcgacgcattaagtagattggcgagcggctttcgtggtatttttattacc
ccttttgccggattgaggaagctgcttcctctaagtgagatttacacagaagcacaaatc
catatttccgttggggaaactttgcaggttgaagatttcttattgaaaatgacggaaatc
ggctatgaacgagttgaaagagttgaagccaaaggtgaaatgagtgtgcgtggaggcatt
attgacgtatttccgctgactgcagagactccatatcgaatagagctttttgatgtagag
gttgactctatacgcagctttgatgttgtggatcagcgctcgatcgagaagttaactaat
ctaaccattcttccctgcaaagaaataatagccgatcaaagaaggtataagaacgcggca
cagcatgcatcggagctattgcagcagcaattagagaaaatgaccgataaacaagcgaag
actaagctaaaagaagaaattggccatgaaatagcgcagctggaacagcatcaccacttt
cccagcatttataaatacatttctttgttgtacccggaacggcaaaccttgctagattat
gtagctaaagatagcttgctcttgattgatgaaccagcgcgtttactggaaacctcgaag
cagatggagcgggatgaagctgaattaataaccaacctattgcaagagggtaaatgcttg
ccttcttttgtgatggctaaaacttacgataccctattgcatcgcaagccatttccgaca
ctctatctctcgcttttcttgcgtcaggtaccgcaaactcagccgcagaatatcgtaaac
tttatgtgccgctcgatgcagaatttccatgggcagatgaatttactcaaagcggaaatg
gaccgttggaagaaaacaggctgtaccgtattgctgctcactaacggtgatgagcggatg
gagcggattaagcgtattctgcaggattatcaaattgatgagcctattctgttaaatggc
aatttgcaaagcgggtttgagctgccttctattcggcttgttgttgtaaccgaaggggaa
ttatttactcaaaagcaacgcaaggttcggaagatggataaaaaaattgaaaatgcagag
cggattaagaattatcaagaattgaaggtcggcgatcatgttgttcatgtcaatcatggg
attggtaagtacataggcattggcaccttagaaatcaacgggatgcacaaggattacttg
catattctttatgcgggtggcgataagctgtctgtacctattgaccagtttgatttgatt
caaaaatatgtgggatcggaagagaaagagcctaaggtttataaattaggcggatccgac
tgggcacgggttaagagtaaggttcgttcaacagtcaaggatattgctgatgaattgatt
cagctctacgcggaacgccaagcaacaaccggttatggatttaatccggataccccttat
caaagtgagtttgaagacttgtttccatacgatgaaacaagagaccaattgcgcgccatt
gacgagatcaagaaagatatggaaaaaccacgtccgatggatcgtttattatgcggcgat
gtgggttatgggaaaacggaagtcgccatacgtgcagcttttaaagcttctattgatggc
aaacaagtcgctgtgcttgtacctactacgattctggctcaacagcactatgcaacattt
cgcgagcgattctccggttatccaatccaaatccaagtgctcagccgttttcgctccaaa
aaagagcaaaccgagacgatcaaagggattaaaaaagggacagtcgatgtcgtcatcggc
acacatcggttgctttccagtgatattcaatttaaagaattgggtttgctgatcgtagat
gaagaacagcgttttggcgtctcccataaagaaaaacttaaacggttgaagatggatgtg
gatgttctcactctaacagctacaccgatcccgagaactctgcatatgtctatgttaggt
gttagggatctgtccgtgattgaaacgcctccggagaatcgttttccggtgcaaacctat
gtcgtcgagcacagctttgctttggccagagaagcgattgagcgagagctggctcgcgaa
gggcaagtctactatttattcaatcgtgtccaaggcatacatcagattgcagagcagctt
tccatgcttgttcccgatgccagagtagctgtagcccacggtcaaatgcctgaacaagag
ctagagcgcacgattctcgactttctggaaggcgaatatgatgtcttggttagtacgagt
attattgaaacaggcgtggatatacccaatgtaaatacgctgattgttcatgatgcagat
aagatggggctgtcccaactctatcagctgcgtggacgtgtcggtcggtccaatagaatt
gcttatgcctattttacttaccaacgggataaaatattaaatgaagttgcggagaagcgg
ctgcaggcgatcaaagagtttactgagctgggttccgggttcaaaattgctatgcgagat
ttatctattcgcggagcaggtaatttattgggagcggagcagcatgggtttattgcttct
gttggctttgatctttattcgcaaatgctcgcacaagaaatcgccacgcgtaaagcggaa
atgggcggtgaagccaaggtagaagccaaaccatggagtacattgctagagctgcaaatt
gatgcctatttaccttcggactacatttatgatagtatgcagaagattgagatttataaa
aaagtagttaatttaacaactatagaagaagtggcggacctgcatgaggaattggttgat
cgattcggagatttgcctgcagcggttgataacttgctggcggttgcaagaattaaagtt
tacggatccttgtatgccattgaatcgataagtcaaaaaggggatgattaccagattaaa
atccatacagagcaaagtgggaatatcgatgggaaaaaactggtagcgctatctactcaa
tttgagggcagattaaaggtcattccaggtccacatatccttatagaattacgctgcaag
aatctagctgcagatcaagctgtccaattattggagagattcctgcacggctatcaagat
gtacttaaaacaaaaggagagttgcaaaatgttgccaaataa
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