Paenibacillus psychroresistens: EHS13_07980
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Entry
EHS13_07980 CDS
T06328
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EHS13_07980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_07980
Enzymes [BR:
ppsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EHS13_07980
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EHS13_07980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGQ94820
UniProt:
A0A6B8RF59
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All DBs
Position
1768847..1769731
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AA seq
294 aa
AA seq
DB search
MSGNEAGILEIEGNQIPVSHPDKILWPKLKISKLLYLQKLTVLAPFLLPYCKNRYLTIIR
FPNGVQGKSFYQKNAPHPLPPYVKTAEKEGVEYIHLDSLSTLLWLGNLAALEFHASFEYI
GGDEPAEWVFDIDPSDEEEPRLMEAVAIIGETLETMGITSIPKTSGATGVQIIIPIQTGH
TFEELRKAGHFVSEYLVEKYPHLFTIERLIKNRGNKIYIDYIQHGLGKSIAAPYTPRARE
DATVSTPLLWEEVKQNINPKLFNLLTIEARLADKGDLISTMEKQDLSRILKIIK
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaatgaagctggaattcttgagattgaaggaaatcaaatacccgtaagtcat
ccagataaaatactttggccgaaattaaaaatcagtaagttattatatctccaaaagttg
acggtccttgcaccctttctacttccctattgtaagaatcggtatctgacaataatccgt
tttcctaatggagtgcagggaaaatccttttatcagaaaaatgcaccgcaccccttgccg
ccctacgtgaagacggctgaaaaggaaggagtcgagtatattcatttagattctttgtct
acgttattatggcttggtaatcttgcagctcttgaatttcatgcttcttttgaatatatt
ggcggagacgagcctgctgaatgggtgtttgatattgatccaagtgatgaagaagaacct
cgattaatggaggcagttgcaatcattggtgaaacactagaaaccatgggaataacatcc
attcccaaaacctctggagcgaccggggttcaaatcattatccccattcaaaccggccac
accttcgaggagctgcggaaggcgggacactttgtaagtgaatatttggttgagaaatac
cctcatttattcacaatcgaacgcttgattaagaatcgcggcaataaaatatatatagat
tatatccagcatggtcttgggaaaagcatagctgcgccttatacgcctagggcaagagaa
gatgcaaccgtctcaacaccgctcttgtgggaagaagtgaagcaaaatatcaaccccaag
ctatttaatttattaacaatcgaagcacgtttggctgataaaggtgatcttatctctaca
atggagaaacaggatttgagtcgaatattgaaaataatcaaataa
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