Pseudomonas pseudoalcaligenes: BN5_0288
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Entry
BN5_0288 CDS
T03772
Symbol
recQ1
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppse
Pseudomonas pseudoalcaligenes
Pathway
ppse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN5_0288 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppse03019
]
BN5_0288 (recQ1)
03400 DNA repair and recombination proteins [BR:
ppse03400
]
BN5_0288 (recQ1)
Enzymes [BR:
ppse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN5_0288 (recQ1)
Messenger RNA biogenesis [BR:
ppse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN5_0288 (recQ1)
DNA repair and recombination proteins [BR:
ppse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN5_0288 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
CDM38902
UniProt:
W6QQV6
LinkDB
All DBs
Position
295787..297709
Genome browser
AA seq
640 aa
AA seq
DB search
MSTLKRVFGFDQLRPGQETVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISP
LLALMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN
FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGIKQVLLLTATATPKVIADMR
EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKQQRLQQWLAPRRGQASIVYVTQQKTSEQ
VAEHLAGDGLAVSAYHAGMAHDVRESIQRRFMAGELECIVATIAFGMGIDKRDIRNVVHF
DLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVFGDTPELSGIRAVLDDLRA
VGTGGQWELMLGQLSELSNIRALPLKTLLVQLELRGIIAPRYAYFAEYRFKLLLEDDVLL
AKFEGERRQFVEAILASSRRARTWSTLDFDLLYRDHGAERARVVKALDYFQEKGWLELES
KQMTEVYAVLDGGFDVEALADDLYAHFRAHEASEIARIQAMLGLFESRECLSRRLALYFG
DEQAPERCGHCSVCQGRVATLPQPPELPSLNGRDAQALCAAFVEKHLQYAGHAPSHECLT
RFLCGVTTPLLTKLKARQLAGFAALEDYPYAEVREWLTGL
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccctcaaacgcgtcttcggtttcgatcaactgcgtcccggccaggaaacggtg
atcagcgccgtgctcgccggtcgttcggcggcggcgatctttcctaccggttcgggcaag
tcgctgtgctatcagttgccggccttgcatctgccacacctgaccctggtgatttcgccg
ttgctggcgttgatgcaggatcagttggcgttcctgcatgcccatggcatcgccgcggcc
agcatcgattcggcgcagagccgcgagcaggccgcggaggtgatgaatcgcgcgcgcagc
ggcgagctgaagatcctgatgatctcggtggagcggctgaagaacgagcgttttcgcaat
tttatcgctcaggtgccgatctccctgctggtcgtagacgaggcgcactgcatctccgag
tggggccacaacttccgcccggactacctcaagctgcccgactaccagcgccagttcggc
atcaagcaggtgctgctgctgaccgccacggcgacgcccaaggtgatcgccgatatgcgc
gagaagttcgccattgccgaggcggacgtggtcaccactggtttctaccggcccaacctc
aatctgctggtcgagcccgtgcccggaggtgccaagcagcagcgtctgcagcaatggctg
gcgccgcgacgcggccaggcgagcatcgtttacgtcacccagcagaagacctccgagcag
gtcgccgagcatctggcgggtgatggtctggcggtcagcgcttaccacgcgggtatggcc
catgacgtacgtgagtcgatccagcgccgtttcatggctggcgagctggagtgcatcgtc
gccaccatcgccttcggcatgggcatcgacaagcgtgatatccgcaacgtggtgcacttc
gacctgcccaaatcggtggagaactacagccaggaaatcggccgcgccgggcgtgacggc
caggcctcggactgcctggtgctggccagccgcgatggcctcagcgtgttggaaaatttc
gtttttggcgatacgcccgagctcagcggtatccgcgccgtgctcgatgatttgcgcgcg
gtcggcacgggcgggcagtgggagctgatgctcgggcagctgtcggagctgagcaatatt
cgcgcgttgccactcaagaccctgctggtgcagctggaactgcgcggcatcatcgccccg
cgttatgcctacttcgccgagtaccgcttcaagctgctgctggaggatgacgtgctgctg
gccaagttcgagggcgagcgccgccagttcgtcgaggcgattcttgccagctcacggcgc
gcgcgaacctggagcaccctggattttgacctgctgtatcgcgaccatggcgccgagcgc
gcgcgggtggtcaaggcactggactacttccaggaaaagggctggctggagctggaaagc
aagcagatgaccgaggtctacgccgtgctcgatggcgggtttgacgtcgaagccctggcg
gatgacctgtacgcacacttccgcgcccatgaggccagcgagatcgcccgcattcaggcc
atgctcggtttgttcgagagccgcgaatgcctgagccggcgccttgccttgtactttggt
gacgaacaggcgcccgagcgctgcgggcattgttctgtgtgtcagggccgcgtagccact
ttgccgcaaccgcccgagctgccgtcattgaatggtcgcgatgcccaggcgctgtgcgca
gccttcgtcgagaaacacctgcaatacgctggacacgcgccgagccacgagtgcctgacg
cgctttctctgcggcgtgaccacgcccttgttgaccaagctcaaggcgcgtcagttggct
ggcttcgctgcgctggaggattacccctacgccgaggtgcgtgagtggttgacgggtctg
tag
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