Pseudomonas psychrotolerans: BJP27_21205
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Entry
BJP27_21205 CDS
T05074
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ppsl
Pseudomonas psychrotolerans
Pathway
ppsl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ppsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJP27_21205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsl03400
]
BJP27_21205
DNA repair and recombination proteins [BR:
ppsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BJP27_21205
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJP27_21205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
nSTAND1
DnaJ_CXXCXGXG
AAA_29
AAA_16
DUF5351
Motif
Other DBs
NCBI-ProteinID:
APQ13890
LinkDB
All DBs
Position
complement(4717053..4719665)
Genome browser
AA seq
870 aa
AA seq
DB search
MPSSPRPGFVSVRGAREHNLKNVDVDIPRDALVVFTGVSGSGKSSLAFGTLYAEAQRRYF
ESVAPYARRLIDQVGVPQVEAIEGLPPAVALQQQRGQPSSRSSMGSVTGLSSLVRMLYSR
AGRYPADQPMLYAEDFSPNTPQGACPQCHGLGRVYEVTEASMVPDPSLTIRQRAIAAWPT
AWGGQNLRDILVTLGYDVDVPWRDLPQEQRDWILFTEEQPTVPVYAGLTPEQTRAALKRK
AEPSYQGTYTGARRHVLHTFANSQSAKMKQRAARFMIGQTCPLCHGKRLTRAALSVTFAG
LDIGELSQLPLDDLSVLLRRVAAGDFDEAKDARVLDAKTGQQDRARRKAAGGSDHAGAPD
VRRTPDLSPEKRLAAQRMATELLERLQTLTRLGLGYLALERSTTTLSSGELQRLRLATQL
VSQLFGVVYVLDEPSAGLHPADGESLLEALDGLKAQGNSLFVVEHDLATMQRADWLVDVG
PAAGEGGGRVLYSGPPAGLAEVKESVTARYLFAAPQRETRPPREPQGWLRLAGVTRNNLQ
GLDAAFPLGCLTAVTGVSGSGKSSLVSQALLELVGAELGQGAAEDGDEGVELDADALPAT
TGQVVGGLGGIRRLVPVDQKPIGRTPRSNLATYTGLFDGVRKLFAATPEAQERGFDAGRF
SFNVAKGRCPTCEGEGFVSVELLFMPSVYAACPTCQGARYNPETLEVRWQGKTIAEVLGL
TVDEALALFAEEAAVARALRVLADIGLGYLRLGQPATELSGGEAQRIKLATELQRTSRGT
TLYVLDEPTTGLHPADVERLMCQLHGLVEEGNTVVLVEHNLQVVAGSDWLIDIGPGAGAA
GGRIVACGTPRAVADDPASPTAPYLRPLFD
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttctccccgccccggttttgtctccgtccgcggtgcccgcgagcacaacctg
aagaacgtcgacgtggacattccccgcgacgccctggtggtgttcaccggggtgtccggc
tcgggcaagtcgtcgctggccttcggcaccctctatgccgaggcccagcgccgctacttc
gaatcggtggcgccctatgcgcggcggctgatcgaccaggtgggggtgccccaggtggag
gccatcgaaggcctgccgccggcggtggccctgcagcagcagcgtggccaaccgagcagt
cgttcgtccatgggcagcgtgaccgggctgtccagcctggtgcggatgctctattcccgc
gccggccgttatccggccgaccagccgatgctctatgccgaggacttctcgcccaacacg
ccccagggcgcctgcccccagtgccacggcctgggccgggtctacgaggtgacggaagcc
tccatggtgccggacccctcgctgaccatccgccagcgtgccatcgccgcctggcccacc
gcctggggcgggcagaacctgagggacatcctggtgaccctgggctatgacgtcgacgtc
ccctggcgcgacctgccgcaagagcagcgcgattggatcctcttcaccgaggagcagccc
acggtgccggtctatgccggtctcacccccgagcagacccgcgccgcgctcaagcgcaag
gccgagcccagctaccagggcacctacaccggggcgcggcgccatgtgctgcacaccttc
gccaactcccagagcgccaagatgaagcaacgcgcggcgcgcttcatgatcggccagacc
tgcccgctgtgccacggcaagcggctgacccgggcggcgctctcggtgaccttcgccggg
ctggacatcggcgagctgtcgcagctgccgctggatgacctgagcgtgctgttgcgccgg
gtggcggccggggatttcgacgaggcgaaagatgcccgcgtgctggacgccaaaaccggc
cagcaggaccgcgctcgccgcaaggccgctggtggcagcgaccatgccggcgcgccggac
gtgcgccgcacgcccgatctttcgccggagaagcgcctggccgcccagcgcatggccacc
gaattgctggagcgcttgcagacccttacccgcctgggcctcggctacctggcgctggag
cgcagcaccaccaccctctcttccggcgaattgcagcgcctgcgtctggccactcaactg
gtgtcccagttgttcggcgtggtctatgtgctggacgagccctccgccggtctgcatccg
gccgatggcgaatccctcctggaagccctcgacggcctcaaggcccagggcaactcgctg
ttcgtggtggagcacgacctggccaccatgcagcgggccgactggctggtggacgtcggc
cccgcagccggcgaaggcggtggccgggtgctctacagcggtccgcctgcaggtcttgcc
gaggtcaaggaatcggtgacggcgcgctatctgttcgccgcgccgcagcgcgagacccgg
cctccgcgcgagccccagggctggctgcggctggccggggtcacccgcaataacctgcag
gggctggacgccgccttcccgctgggctgcctgaccgcggtgaccggcgtgtccggctcg
ggcaagtccagcctggtcagccaggcgttgctggaattggtgggcgccgagctgggccag
ggcgctgccgaagatggcgacgaaggggtggagctggatgccgatgccctgcccgccacc
accggccaggtggtcggtggcctcggcggtatccgtcgcctggtgccggtggaccaaaaa
cccatcggccgtaccccacgctccaacctcgccacctataccgggctgttcgacggggtg
cgcaagctgttcgccgccactccggaagcccaggaacgcggcttcgacgccgggcgcttc
tctttcaacgtcgccaagggccgctgcccgacctgcgaaggcgaaggcttcgtcagcgtt
gagttgctgttcatgcccagcgtctatgccgcctgccccacctgccagggcgcccgctac
aaccccgagaccctggaggtgcgctggcagggcaagaccatcgccgaggtgctgggcctg
acggtggacgaggccctggccctcttcgccgaggaagccgcggtggcgcgggcgctgcgg
gtgctggccgacatcggcctgggctacctgcgcctcggccaaccggccaccgaactctcc
ggcggcgaggcccagcgcatcaagctggccaccgaactgcaacgcaccagccgtggcacc
accctctatgtgctggacgaacccaccaccggcctgcacccggccgacgtggaacggctg
atgtgccagctgcacggcctggtcgaggaaggcaataccgtggtgctggtggagcacaac
ctgcaggtggtggccggcagcgactggctgatcgacatcggccccggtgccggcgcggcg
ggtggccgcatcgtcgcctgcggcacgccccgcgcggtagcggacgatcccgccagcccc
acggcgccctatctgcggccgctgttcgactag
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