Pseudomonas putida HB3267: B479_19330
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Entry
B479_19330 CDS
T02389
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ppuh
Pseudomonas putida HB3267
Brite
KEGG Orthology (KO) [BR:
ppuh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppuh03019
]
B479_19330
Enzymes [BR:
ppuh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B479_19330
Messenger RNA biogenesis [BR:
ppuh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B479_19330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
AAA_25
ABC_tran
ResIII
AAA_30
NACHT
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AGA74758
LinkDB
All DBs
Position
complement(4261451..4265356)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHELRKRPDEAKLAQWVEKVQASCAQVTARQQS
VPTVRYDDSLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAHHERSEGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKDPSDYPKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVARIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEELDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSLQVGELRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPRALRKNFVPVPDFVKASLARMTFGQGALPQALGQELLRMTGARVPDEAWD
ESVNLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDAKSEQPVQAK
AFSEVKQTAQQKIAGLSMTVYPALVEEGGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKYLRGKLPGLTELGLLYREMGRVEALVEDILLASLDSCILEGEQPLPRDGAALAGLAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcgccggcaattgcacgaactgcgcaagcgccccgacgaggcgaagctg
gcgcagtgggtggaaaaggtccaggcgtcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgaccgtgcgctacgacgacagcctgccaatcgctgccaagcgtgacgaaatcaag
aaggccctggccgagcaccaggtgctggtgatcgccggcgaaaccggctcgggcaagacc
acccagttgccgaagatctgtctcgaactgggccgtggcagccatggcctgatcgcccac
acccagcctcgccggatcgccgcccgcagcgttgccgcgcgggtcgccgaagagctgggc
acgccgctgggcgggctggtcggctaccaggtgcgcttcgaggaccagagcgacgccaac
accctggtcaagctgatgaccgacggcattctgctggccgaaacccagcacgaccgtttc
ctcgagcgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctgaagaccctgctgcaccgccgcccggacctgaagctgatcatc
acctcggcgaccatcgacctggagcgcttctccaaacacttcgatggcgcgccgatcatc
gaggtgtccgggcgtaccttcccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaggagggcaaccagatcgaggacgacctcaccgtcgaccaggccatcctcgccacg
ctggatgagttggcgcaccacgagcggagtgagggcaagggccccggcgatgtgctgatc
tttctgccgggcgagcgcgagatccgtgatgccgccgagatcttgcgcaaggcgcaactg
cgccacaccgagatcctgccgttgtacgcgcgcctgtcgccggccgagcagcagcgcatc
ttccagccacacaccgggcgccgtgtggtgctggccaccaacgtcgcggaaacctcgctg
accgtgccgggcatccgctacgtgatcgacaccggtaccgcgcgcatcagccgctacagc
taccgcgccaaggtgcagcgcctgcccatcgaggcagtgtcgcaggccagtgccaaccag
cgcaagggtcgctgtggccgggtcgagccgggtatctgcgttcgcctgtacagcgaagag
gatttcaacagccggccggcgttcaccgacccggagatcctgcgcaccaacctggcggca
gtgatcctgcagatgctgcacctgcgcctgggcgcaatcgacgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgatggtttcaacctgctgcaggagctgtcggcggtc
aaccgcgaaaaccagctgacgccgatcggtcgccaactggcgcgcctgccgatcgacccg
cggctgggccgcatgctgctcgaaggcgcccgcctgggcagcctgcaggaagtgctgatc
gtcaccagtgcgctgtcggtgcaagacccgcgcgaacgcccgccagagcgccagcaggcc
gccgatcaggcgcacgcacaatggaaggacgtggattccgacttcgccgcgttggtcaac
ctgtggcgtggcttcgaggaacagcgccaggcgctgaccgccaacccgctgcgcaactgg
tgccgcaaaaacttcctgaactacctgcgcctgcgcgaatggcgcgatgcccatcgccag
ctggcgctgatctgccgtgacctgcagttgacggtaaacaaggacccgtccgactacccg
aaaatgcacaaggccattctcagtggcctgctcagccagatcggccagaagaccgaagag
ggcgactaccagggcgcccgtcagcggcgcttctgggtgcacccgtcgtcgggcctgggg
cgcaagcgcccgcagtgggtgatggcggccgaactggtcgaaaccaccaagctgtacgca
cgcatggtggccaggatcgagccggactggatcgagccgttggccggccacctggtcaag
aagaaccacttcgaaccgcattgggagaagaagcgcgggcaggtggtggcctacgagcag
atcactctgtacggcctgatcctggtcggccgtcggccggtgcatttcggcccgatcgac
ccggtcacatcgcgcgagctgttcatccgcgaaggcctggtgggtggcgaaatccagtcg
cgggccaagtgcctggcggccaacaagcgcctgctggaggagctcgacgagctggaggcc
aaggcccgccgccgtgacatcctggccgacgaagagacgctgtatgccttctacgaagcg
cgtctgccggcggaaatccaccagacggcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaagacgtgctggcccgcgaggccagc
gaagtcaccgccgcgcagtaccccgacagcttgcaggtgggcgagctgcgcctgccgctg
agttaccacttcgagcccgggcacccccgcgatggcgtgaccgtgcgggtaccagcgccg
ctgctgccgagcttgccgggcgagcgcctggaatggcttgtgcccggcctgctggaagcc
aagtgcgtggcgctggtgcgcaacctgcccagggcgctgcgcaagaactttgtgccggtg
ccggacttcgtcaaggcctctctggcgcgcatgaccttcggccagggcgcattgccgcag
gccctgggccaggaactgctgcgcatgaccggcgcccgtgtgcccgacgaggcatgggac
gagtcggtcaacctggtcgaaggccacctgcgcatgaacatcgaggttgtcgatggccag
ggcaagtttctgggtgaaggccgcgacctggccgagctgaccgcacgctttgctgcagcc
agccaggcagcgttggccgtgccgcgtgacgccaagagcgagcagccggtgcaggccaag
gctttcagcgaggttaagcagaccgcgcagcagaaaattgccggcctgtcgatgaccgtg
tacccggcactggtggaagagggcggcaccgtgcgcgaagggcgtttctcgacccaggcc
gaggccgagttccagcaccgccgcgctttgcagcgcctgttgctgcagcagttggccgaa
ccggccaagtacctgcgcggcaagctgccggggctgaccgagctgggcctgctgtaccgt
gaaatgggccgggtcgaggcgctggtcgaggacattctgctggccagcctggacagctgc
atccttgaaggcgaacagccgctgccacgcgatggtgcggccctggctggcctggccgag
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcacggcagaccctggaagtg
ctgaagctgtggcatgggctgcagaagcgcttcaagggcaagatcgacctgagccaggca
gtggcgcttaacgacatcaagcaacagctcggcaacctggtgtacccaggcttcgtgcgt
gaaacccccggggcctggttcaaggagctgccgcgttacctcaaggcggtggagctgcgc
ctggagaagctgggttcgcaggtgcagaaggaccgggtgtggagcggtgagctggccaac
ctgtgggcgcagtacaaggcacgtgccgacaagcatgcccaggaaggcaagcgtgatgag
caactgacggtgtaccgctggtggctggaggaatatcgggtttcgctgtttgcccagcag
ttggggaccaaggtgccgatttccgacaagcgattgagcaagcaatggagccaggtggaa
ggctaa
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