Pseudomonas putida NBRC 14164: PP4_47870
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Entry
PP4_47870 CDS
T02707
Symbol
hrpB
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ppun
Pseudomonas putida NBRC 14164
Brite
KEGG Orthology (KO) [BR:
ppun00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppun03019
]
PP4_47870 (hrpB)
Enzymes [BR:
ppun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PP4_47870 (hrpB)
Messenger RNA biogenesis [BR:
ppun03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PP4_47870 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
BAN56640
LinkDB
All DBs
Position
complement(5419997..5422045)
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AA seq
682 aa
AA seq
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MLRDDPPLKIMLMSATLEGERLSRLLDDAPVVSSEGRMHPVDIRWGRPFQPGEFIEPRVV
DSVLQALADQTGSVLVFLPGQAEIRRVHQSLQEALGERPEILLCPLHGELDLNAQRAAID
PAPKGQRKVVLATNIAETSLTIDGVRVVIDAGLARVPRFDPGSGMTRLDTQRISRASATQ
RAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEILQADLAGLALQLARWGVAPHELSWLDQ
PPSAAFTQAQDLLARLGAFKPGSRDNLSDHGQAMAELPAHPRIAHLLLRGQSLGLAAMAC
DVAALLGERDIQRGGGADLHSRLALVSGESKASRGGQGGVQRARQLARQYRGLLRGKAGA
AVADPDHPRWLGALLALAYPDRVAQQRRAGGAEYRLANGRAALFGEVDALMKHPWLVIAD
LGSRQGQSEERIYLAAEFDPALLDDVLAEQVERVDLLDWDEREQVLRAERQTKVGELILS
REPLAGLTDEARANALLGLVRRKGLNLLTWTPELRQWQARVALLRQLDLDRDGQSEWPDL
GDEALLASMEDWLQPYLGKVSRLSHFSALDLPSLLRNLLPWPLPQRLEEQAPAHLAVPSG
SNIRLDYSETPPILAVRLQELFGLADTPRIANGRQQVKLHLLSPARRPVQVTQDLANFWR
TTYAEVKKDLKGRYPKLPRNVA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
ttgctgcgtgacgacccaccgctgaagatcatgctgatgtcggcaaccctggaaggcgag
cgcctgtcgcggctgctggacgacgccccggtggtcagcagtgagggccgcatgcacccg
gtggacatccgctgggggcggcccttccagccgggcgagttcatcgagccacgcgtcgtg
gacagcgtgctgcaggcgctggccgaccagacgggcagtgtgctggtgttcttgccgggc
caggccgaaatccgccgggtgcaccagagcctgcaggaagcactgggcgagcggccggag
attctgctgtgcccgctgcatggcgaacttgacctcaatgcccagcgtgcagccatcgac
ccggcgcccaagggccagcgcaaggtggtgctggccaccaacattgccgaaaccagcctg
accatcgacggcgtgcgcgtcgtgatcgacgcaggcctggcccgggtgccgcgttttgac
cctggcagtggcatgacccggctggatacccagcgtatctcccgcgccagcgccacccag
cgtgccggccgtgccggccgcctggagccgggcgtgtgctaccggctgtggtccgaagcc
cagcatgaccaactggctgcccatggcagcgccgaaatcctccaggccgacctggcaggc
ctggccttgcaactggcgcgctggggcgtcgccccgcatgagttgagctggctcgaccaa
ccgcccagcgcagcgtttacccaggctcaggacctgctggcgcgcctgggggcattcaaa
ccgggcagccgcgacaacctcagcgatcacggccaggccatggccgagctgccggctcac
ccacgcatcgcccatttgttgctgcgtggtcagagcctggggttggccgccatggcctgt
gatgtggcggcgttgctcggtgagcgggatatccagcgtggcggcggtgccgacctgcac
agccggctggccttggtcagcggcgagagcaaggccagccgtggcggccagggtggcgtg
cagcgcgcccggcagcttgcgcgccagtaccgtgggctgttgcgcggcaaggcgggggcc
gccgtcgccgaccccgaccatccgcgttggcttggcgccttgctggcgctggcctatccc
gaccgggtcgcgcagcagcggcgtgcagggggcgccgagtatcgcctggccaacggccgt
gctgccttgttcggcgaggtcgatgcgttgatgaagcacccgtggttggtgatcgccgac
ctgggcagccgccagggccagagcgaagagcgcatctaccttgcggcagaatttgacccg
gcgctgcttgatgatgtgctggccgagcaggtcgagcgtgtcgatctactcgactgggac
gagcgtgagcaggtgctgcgtgccgaacgccaaaccaaagtcggtgagctgatactaagc
cgtgaaccactggcgggcctgactgacgaagcgcgggccaatgcgctgcttggcctggta
cggcgcaaaggcctgaacctgctgacatggaccccggaactgcgccagtggcaggcgcgc
gtggcactgttgcgccagctggacctggacagggacgggcaaagtgaatggcccgacctg
ggtgacgaggcgctgctcgccagcatggaagactggttgcagccctaccttggcaaagtg
tcccggctcagccacttcagcgcgctggacctgccgtcgctgctgcgcaacctgctgccc
tggccgctgccgcaacgcctggaagaacaggcccccgcgcatctggccgtgccgtccggc
tcgaatatccgcctggactacagcgaaaccccgccgattctcgccgtgcgcctgcaagaa
ctgttcggcctggccgataccccgcgcatcgccaatggccggcagcaggtcaagttgcac
ctgctgtcgccggcacgccgaccggtgcaggtcacccaggacctggccaacttctggcgc
acgacctatgccgaagtgaagaaagacctcaaagggcggtaccccaagctaccacgcaac
gttgcctga
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