Podarcis raffonei (Aeolian wall lizard): 128413930
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Entry
128413930 CDS
T09310
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
praf00536
]
128413930 (COL13A1)
Glycosaminoglycan binding proteins [BR:
praf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128413930 (COL13A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128413930
NCBI-ProteinID:
XP_053244452
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All DBs
Position
5:31351461..31434927
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AA seq
576 aa
AA seq
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MGIRGLPGLKGQPGEKGAPGEAGISIIGPRGPPGQPGTRGFPGFPGQIGLDGKPGQPGQK
GEVGPAGPKGQPGTAGQKGEKGQCGDYPHREYLSTTLAALRSNQILTLKLLPLLNSVRLA
PPPVIKRRTFQGEQGQAGIQGPPGPPGPPGLPGTPGQPGPTGPAGKAGEPGKPGKDGKGL
PGPPGPKGDPGIQGYHGRKGEVGEAGLPGTPGLPGPSGPKGEKGEPSMKGEPGIPGAKGE
RGVAGKMGPPGLPGKRGQRGEKGKPGDPGPPGTIGQKGDKGDSDNALGGGKGEPGPPGLP
GPPGPKGPKGEPGKNEMVDYNGNINEALQEIRTLALMGPPGLPGVAGPPGLPGQKGEIGL
PGPPGHDGEKGLDGLAGEKGDQGMPGPLGLTGPIGLPGLTGEKGEPGAKGDTGDSVPGPP
GPQGPPGTPGLQGGRGPKGEAGISGMKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGTP
GPVGVPGPAGPKGERGNKGDPGTAGPTGPAGLPGSQGSPGEKGNRGERGKKGSRGPKGDK
GDQGAPGLDAPCPLGEDGLPVQGCWNKGQTPWLIAK
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggggatccgtggactaccgggactaaaggggcaacctggagagaagggagccccagga
gaagccggcatatccatcatcggtccccgtggcccaccaggacagcctggaacaagaggt
tttcctgggtttccgggtcagattggtttagacggcaaaccagggcaacctggacagaag
ggagaagtgggcccagctggtcccaaaggacaaccaggaaccgctggacaaaaaggagaa
aagggtcaatgtggagattatccacacagggaatacctaagcaccacacttgcagccctg
cgttctaatcagatccttacactgaagctgttgcctcttctcaattcagtgcggctggct
ccacccccagtcataaagagacgcaccttccagggtgaacagggacaggcaggaatccaa
gggcctccagggccacctgggccaccaggcctcccagggactccaggacaacctggacca
actggaccagctggaaaagcaggagaaccagggaagcctggcaaggatggaaagggcttg
ccaggacctcctggaccaaagggggaccctggaattcaggggtaccatggaagaaagggt
gaggtgggtgaggctggcttacctggcacccctggccttcctggtccttctggcccaaag
ggtgaaaagggggagcctagcatgaagggtgagccagggattccaggagcaaagggagaa
cgtggagttgcagggaagatgggccccccaggtttgccagggaaaagggggcagaggggc
gagaaaggaaaacctggtgatccgggacctcctggaaccataggacaaaagggagataag
ggagattctgacaatgcacttggaggaggtaaaggggaacctggaccccctggtttacct
ggacctcctggaccaaagggtcccaagggtgaaccaggaaagaatgaaatggtagattac
aatggcaatatcaatgaagctttacaggagatacgaaccttggctcttatgggacctcct
ggactacctggtgtcgcaggtcctccaggactacctggacagaagggtgaaattggcctg
cctggtcctcctggacatgatggagaaaagggtcttgatggcttagctggagaaaaaggt
gatcaggggatgccaggacctctaggcctaacaggtccaatcggacttccaggattaaca
ggagagaaaggagaacctggcgcaaaaggagacactggagattcagtaccagggccccca
gggccccaaggcccaccaggaacaccaggtcttcaaggtggtcgagggcctaagggggaa
gcaggcatttctggaatgaaaggcgaaaagggtgcccagggagaaaaaggagaccgaggt
cctctgggattgcccggtgcttcaggtttagacggcaggcctggcccaccgggtactccg
ggaccagttggagttccaggaccagcaggaccaaaaggagagaggggcaataaaggagac
cctggaacagcaggaccaacaggaccagcaggacttcctggttcacaaggctcaccaggt
gaaaaaggaaaccggggggaaaggggcaagaaaggctctagggggcctaaaggggataag
ggagaccaaggagcacctggattagatgcaccctgcccattgggggaagatggcttgcca
gttcaaggatgctggaataagggtcaaactccttggctgatagccaaataa
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