Podarcis raffonei (Aeolian wall lizard): 128413940
Help
Entry
128413940 CDS
T09310
Symbol
CDH23
Name
(RefSeq) cadherin-23 isoform X1
KO
K06813
cadherin 23
Organism
praf
Podarcis raffonei (Aeolian wall lizard)
Brite
KEGG Orthology (KO) [BR:
praf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
praf03037
]
128413940 (CDH23)
04515 Cell adhesion molecules [BR:
praf04515
]
128413940 (CDH23)
Cilium and associated proteins [BR:
praf03037
]
Primary cilia and associated proteins
USH complex and associated proteins
128413940 (CDH23)
Cell adhesion molecules [BR:
praf04515
]
Cadherins
Major cadherins
128413940 (CDH23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_3
Cadherin_pro
Motif
Other DBs
NCBI-GeneID:
128413940
NCBI-ProteinID:
XP_053244476
LinkDB
All DBs
Position
5:complement(31634055..32025223)
Genome browser
AA seq
3326 aa
AA seq
DB search
MECHFSAKIIFLALLFSEWVCLGLSNRLPYFVNYFFDTYLLINEDTPVGSSVTQLLARDL
DNDPLVFGVVGEEASRFFAVESMTGVVWLRQPLDRETKSEFTVEFSVSDSQGVIKGSVNI
QVGDVNDNAPRFHNQPYSVRIPENTPVGTPIFIVNATDPDQGAGGSVLYSFQPPSNFFAI
DSGRGIVSVIRALDYEVTQAYQLQVNATDQDKTKPLSTLANLAITITDVQDMDPIFINLP
YSTNIYENSPPGTTVRMITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGPLD
RENPFYSAGFILTVKGTELNDDRTPSNASVVTTFNILVIDINDNAPEFNSSEYSVAIPEL
AQVGFALPLFIQVQDKDEGLNSVFEVYLVGNNSNHFIISPTSIQGKADIRIRVAVPLDFE
TIPRYEFSLFANESMPDHVGFARVKINLINENDNRPIFSQVLYNISLFENATVGTTVLSV
LATDNDVGSYGKVSYYFSDDPDRFSLDKDTGVITLIGRLDFETTQRYTLTVIARDGGGEE
TTGRVRINVLDVNDNVPTFQKDSYLGALRENEPSVTQVVRVRASDEDSPPNNQITYSIVN
ASAFRSYFDITLSEGYGVISVVRPLDYEQVPNGVIYLTVMAKDAGIPPLNSTVPITIEVF
DENDNPPTFSKPSYVITVMEDIMAGATVLFLNATDLDRSREYGQESIIYSLEGSSHFRIN
ARSGEITTTSLLDREAKSEYILIVRAVDGGVGHNQKTGIATVNITLLDINDNYPVWKDEP
YFINLVEMTPPDSDVTTVVAFDPDLAENGSLVYSIRPPNKFYSLNSTTGKIRTTGVVLDR
ENPNPQEAELMRKIVVSVTDRGRPPLRATSSATVFVNLLDLNDNDPAFQNLPFITEIPEG
LPAGSSVFQVVAIDLDEGLNGQVTYRMQVGMPRMDFVIDSSSGLINSTAVLDRERIAEYY
LRVVASDAGVPSKSSTSTLTVRVLDVNDENPTFFPAVYNVSLPENVPRDFKVVRLNCTDA
DVGLNAELSYFITGGNQDGKFSVGFRDGVVRTVVSLDRETIPYYTLILEAIDNGPTGKRR
TGTATVYVTVLDVNDNRPIFLQSSYEATVPEDIPDYSSIVQVKATDADEGVNGRVWYRII
KGNSYNNFRINPSSGLVMRGLRPLDRERNSSHVLEVEAYNSEQGPMRSSVRVIVYVEDVN
DEVPVFTQRQYNRLGLRETAGIGTSVAVVRATDRDTGNGGLVNYKIISGSEGKFEIDEST
GLITTIDYLDYETKTSYLMNVSATDQAPPHNQGFCSVYVSLLNELDEAVQFSNVTYEAVI
TENIPLGSEVLRVQARSIDNLNQITYKFDPNTNPQALSLFKINGITGVITVKGQVDREKG
DFYTLTVVADDGGPKLDSTVVTITILDENDNSPQFDITSDSSVSVAEDSSVGRRIALVLA
RDPDAGSNGQVTFSIVSGNIGRAFEIRTTNNTYGEVFVARPLDREMIEHYTLKIQASDRG
VPPRKKEHTLRVNILDVNDNPPVIANPYGYNVSVNENVGGGTAVAQVRATDRDSGLNSVL
SYYITQGNEELTFRMDRVTGEIATRPSPPDRERQQFYQLVVTVEDEGNPALSATTTVYVT
VLDENDNAPVFRQQQYEVTLDEGPGTLNAILITINAVDLDEGPNGTVTYAITEGNIMGTF
HINSTTGQISTMKELDYEISHGRYTLIVTATDQCPIPSRRLTSTTTVLVNLNDINDNQPT
FPHSYEGPFDITEGQPGPRVWTFLAHDGDSGPNGQVEYSIIAGDPLGEFVISPVEGELRV
RKDAELDRENIAFYNLTIAAKDRGVPPLSSTVLVGVRVLDINDNDPVLLNLPMNLTLSEN
APISSFVTRILASDADSGRNALLTFSITAGNIDNAFYINGTTGIVYINRPLDRERVSKYS
LTVTVKDNPENARNARRDFDLLVISVADENDNHPLFTQSSYQAEILENSPPGTRITVLNG
PILALDNDQGINAVVTYQLLGAATDLFSINNRTGVVLVRPGQVIDREAFLNPVLEFLLVA
MDIGKLNSTARLTVTILDDNDNRPTFHPALLTAHLLENSPPGFSVLQVMATDMDSGLNQQ
LSYRIESGAQDRFVINTNTGVISVANISIDREEKDNYRLTVIAVDRGTPPLSGTATVSIL
IDDINDSQPEFINPIQTVSVPESAEIGTVVAEMTARDRDLNPRLEYYIIEILAKDDNDAL
VPDQQGAFAVDFRTGAVKVKSTLNRELVATYEVTISVYDNASDVVDRSVSVPNAKLTVNI
LDVNDNTPRFRPFGALFFKERILEGATPGTTLISVSAVDPDKGANGQITYELLDLSPEGY
VQLEDSSAGKVISNRTVDYEEVQWLNFTVRASDNGSPRRSAEIPVHLEIVDINDNNPIFS
QPSYQKPVFEDVPLGTVILRVRATDADSGRFAQIEYSLGDGEGKFGINPNTGDIYIMSTL
DREKKDHYMLTAVARDNPGAISSDRRENSVQVVITVLDINDCRPQFAKKQYSTSVYENEP
GGTSVITMTATDLDEGDNGMVTYNIEGPGVEAFRIHKDSGLITTRRRLQSYERFNLTVLA
TDKGRPPLWGTTMLQVDVIDINDNRPLFIRPPNGTILHIKEEIPLRSNVYEVYATDKDEG
LNGAVQYTFLKTGAGNKDWEYFTIDPNSGLIQTAMRLDREKQAVYSLIIVACDQGQPPYE
TMQPLQVALDDIDDNEPVFLRPPKGSPPYQVLSVPEHSCPGTVVGNVTGAVDADEGSNAI
VYYFIAAGNRENNFQLSREGKLQVLRDLDREKEAFYSIIVKASSNRNWSPPQGRRATRIQ
AMDLSTDATLQEVRIFLDDINDQPPRFTKSEYTAGVATDAKVGSELIKLVALDADVGNNS
LVLYSILGIRYIKQHSNDSEEVANIFSIGNLDGILRTFDLFTAYNPGYFVVDVMASDLAG
HNDTAVVGVYILRDDQRVKIIINEIPDKVRQFEEEFISLLSNITGAIVNTDDVQFHVDKK
GRVNFAQTELLIHVVNRETNRILDVERVIQMIDENKEQLRNLFRNYNVLDVQPAITARAP
DDMSALQMAIIILAILLFLAAMLFILMNWYYRTAYFVSCRHKRKLKAIVAGSTGNRGFMD
IMDMPNTNKYSFDGANPVWLDPFCRNLELAAQAEHEDDLPENLSEITDLWNSPARTHGTF
GREPSAAKPEEDRYLRAAIQEYDNIAKLGQIMREGPIKLIQNDLDDDDEQRSPSQGSLRF
RHKQPIELKGPDGIHVVHGSTGTLLTSDLNSLPEDDQKVLGRSLETLTADGGAFCDKNAR
TESAKSTPMHKMREVIMESPLEITEL
NT seq
9981 nt
NT seq
+upstream
nt +downstream
nt
atggagtgtcacttttctgccaagatcattttccttgcccttctgttctcggagtgggtc
tgcttgggcctaagcaatcgcttgccgtacttcgtaaattatttcttcgacacatacctg
ttgatcaatgaagatacgccagtgggttcatcggtgacacagctgcttgcccgtgatcta
gacaatgaccctcttgtgtttggagttgttggagaggaagcaagccgattctttgctgtg
gaaagcatgactggagttgtgtggcttaggcaaccattagatagagagactaagtcagaa
ttcacagttgaattttctgtcagcgacagccaaggggtgatcaaggggtctgtgaatatc
caagtgggagatgtgaacgacaatgcaccaaggtttcacaatcagccatatagtgtccgt
atccctgagaacacaccagtgggaactccaattttcatagtgaatgccacagatccagac
cagggagcaggtggaagtgtgctgtattctttccagcctccgtccaacttctttgccatt
gacagtgggcgtggcattgtgtcagtcatccgggccctggattacgaagttacgcaggcc
taccaacttcaggtcaacgctacagaccaagataaaaccaaaccactttctactttggcc
aatctagcgatcaccatcacagatgtgcaagatatggacccaatctttatcaacctgcca
tacagtacaaacatctatgagaactctcctccgggtacaactgtgcgtatgataacagca
atcgaccaggacaagggacgtcccagaggtattggctacacaattgtgtcaggcaacacc
aacagtatatttgcactggactacatcagtggtgctttaacgctgaatgggccactggac
cgagaaaatcctttctacagtgctggatttattcttacagtgaaggggacagaactaaac
gatgaccgcacaccttccaatgcctcagtggtgactaccttcaacattcttgtcattgac
ataaatgacaacgcccctgagttcaacagttcagagtatagtgtggctattcctgagcta
gcccaggtgggctttgctcttcctcttttcatccaagtgcaggataaagacgaggggctc
aacagtgtttttgaagtttacctggtgggaaacaactccaaccactttatcatctctcca
acgtcaattcaaggaaaggcagatatccggattagagttgcagtgccgctggactttgag
acaatccctcgctacgaattttctctgtttgcaaatgagagcatgccagaccatgttggc
tttgcacgggtgaagattaacctcatcaacgagaatgacaaccgcccaattttcagccaa
gtcctctacaacatcagtctgtttgagaatgctaccgtgggaactacagttctgagtgtt
ctggctacagacaatgatgtgggctcttatgggaaagttagctattatttcagtgatgat
cctgacagattctcattggacaaggatacaggtgtaatcacgttgattggccggctggac
ttcgagacaacccagcgttacacattgactgtcattgccagagatggaggtggggaagag
accacagggagagtccgaattaacgtcctggatgtcaatgacaatgtccccacctttcag
aaggattcttatttgggggctctgcgggaaaatgagccttcagtcactcaggtggtccgc
gtgagggcatcagatgaagattctcctccgaacaaccagatcacttatagcattgtgaat
gcttctgcattcagaagttactttgacatcactttgtctgaaggttatggagtgataagc
gttgtccgccctctggattatgagcaagttcccaatggtgttatttatttgactgtaatg
gctaaggatgcaggaatcccaccactcaacagtactgtccccatcaccatagaggttttt
gatgaaaatgacaacccacccacgttcagcaagccttcctatgtcatcacagtcatggag
gatattatggcaggagcaacagtgctgtttctaaatgccactgatttggatcggtcaaga
gaatatggccaggagtccattatctactcactggaagggtcttctcattttcgaatcaat
gctcgctcaggggaaatcaccacaacatctctgctggaccgggaagctaaatctgaatac
atactcattgtgcgagcagtagatggcggtgtgggtcacaaccagaaaacaggcattgcc
actgtaaacatcactttactggacattaatgataactaccccgtgtggaaggatgagcca
tacttcattaacttagtagagatgactcctccagactcggatgtcacaacggtggttgct
tttgacccagacctagcagaaaacggttccctcgtgtacagcattagaccgccaaataaa
ttctacagtcttaacagcaccacagggaagattcggacaacaggggttgtcctggacaga
gaaaatccaaacccccaggaagctgagctcatgaggaagattgtggtctccgtcactgat
cgtggaagaccaccattgcgagccaccagcagtgccacagtgtttgtaaacctgctggat
ctcaatgacaacgacccagctttccagaatttaccttttatcactgagattcccgaggga
cttccagcagggtcatccgttttccaggtggtagccattgaccttgatgaaggcttgaat
ggtcaagtgacataccgtatgcaggtgggcatgcctaggatggactttgtcatcgacagc
agcagtggtcttatcaactccacagctgttctagacagggaaaggattgccgagtactac
ctcagggtagtcgcaagtgatgcaggagtgccgtccaagagttctaccagcactctcacg
gtcagagttttagatgtgaatgatgagaaccccaccttcttcccagctgtctacaacgta
tcgcttcctgaaaacgtacctcgtgatttcaaagtggtccgcctcaactgcactgacgct
gatgtgggtctcaatgccgagctcagttatttcatcacaggtgggaaccaggatggaaag
ttcagtgtcggttttagggatggagtagttcgaacagtcgtcagcctggatagagaaacc
atcccatactatacacttatcctggaggccattgataacggtccaacaggcaaacggagg
actgggacagctactgtatatgtcactgtgctggatgtgaatgacaaccggccaatcttc
cttcaaagcagctacgaagccactgttcctgaagacatccctgactacagcagcatcgta
caggtgaaagccacagatgcagatgaaggtgtgaatggccgggtgtggtacaggattatc
aaaggaaacagttacaacaacttccggatcaatcccagcagtggactggtcatgcgaggc
ttacggcccttggacagggaacgcaattcctcccacgtccttgaagtggaagcctacaat
agtgaacaaggacccatgaggagctctgttagggtcatagtgtacgtggaagatgtcaac
gatgaagtgccggtatttacccaaaggcaatataaccggctgggactgcgtgagactgct
gggatcgggacatctgttgcagttgttcgggcaacagatcgagacacgggaaacggaggt
cttgtgaattacaaaatcatctcaggttctgaggggaagtttgaaatcgacgagagcacc
ggtctcattaccaccattgactatctggactacgagacgaaaaccagctatctgatgaat
gtttcggccacggaccaagcacccccccataaccaaggcttctgcagcgtttatgtcagc
ctcctcaacgaactggatgaggccgtgcagttctcgaatgtcacgtatgaagcagtgatc
acagagaacatccccctgggatctgaagtcctccgagtccaggcgcgctccatcgataac
ctgaaccagatcacgtacaagtttgaccccaatacaaatcctcaggctctgtctttgttc
aaaataaatggcatcactggtgtgatcacagtcaaaggacaggtagatcgagagaaagga
gatttttacaccctaactgttgttgcagatgacggtggtccgaagcttgactcaactgtg
gttactatcaccatactggatgagaatgacaacagcccacagtttgacattacttccgac
tcatctgtgagcgtagcagaggacagttctgttggacgtcgaattgctctggttttggcc
agggaccctgatgcaggaagcaacgggcaggtgactttttctatagtatcaggaaacata
ggcagggcatttgaaatccgtacaaccaacaatacctatggagaagtgtttgtggccaga
ccattggaccgggaaatgattgaacactacactttaaagattcaagcatctgacagaggt
gtcccacctcgcaagaaagaacacaccttaagagtgaatatactggatgttaatgataac
ccaccagttattgcaaatccatatggatacaacgttagcgttaatgagaacgtgggtgga
ggtaccgctgtggctcaggtgcgagcaactgacagggatagtggcctcaacagtgtcctc
tcctactacatcactcaagggaatgaggaactgacctttcgcatggacagagtgactggg
gagatcgccacccgcccttcccctccagaccgtgagaggcagcagttctaccagctggtg
gtcactgtggaggatgaaggcaacccagccctctcggctactaccacggtctatgtcacc
gtcctggatgagaatgacaatgctccagtatttcggcagcagcagtatgaagtcacactg
gatgagggccccggcacacttaacgcaatccttatcaccatcaatgcggtggaccttgac
gaagggccaaacggcacagttacatatgccatcacagaggggaacatcatgggcactttt
cacataaacagcactacgggacaaatcagcaccatgaaggagttggattatgaaatcagc
cacgggcgttacacactgatcgtcactgccacagaccagtgtccgatcccttcacgccgt
ctcacatccaccacaacagtgttagtgaatttgaacgatatcaatgataatcaaccaacg
ttcccacattcctatgaagggccctttgacatcacagaaggacagccagggccaagggtg
tggactttccttgcccacgatggagactcgggacccaatggacaagtggagtacagcatc
atcgcaggggatccccttggagaatttgtgatctctcctgtggaaggggagctacgcgtg
cggaaggatgctgagcttgaccgagaaaacattgctttctataacctcaccattgctgcc
aaggacagaggggtgcctcctctcagctccactgtgttggtgggagtgcgtgttctggac
ataaacgacaacgaccccgtcctcctcaacctaccgatgaatctcactctcagtgaaaat
gctcccatctccagcttcgtcacccgcatccttgccagtgatgctgacagcggcaggaat
gcacttttaaccttcagcatcacagcagggaatatagacaatgctttctacatcaatggc
actactggcatcgtgtacataaaccgcccgctggatagggagcgggtgtccaagtacagc
ttgacagtgacagtgaaggacaacccagaaaatgcacgcaacgcaaggcgggatttcgac
ttgctggtgatttcagtagcagatgaaaatgataatcaccccctcttcactcagagttcc
taccaggctgagatcctggagaactcccctccaggaactcgcatcacagtccttaatggg
ccaattctagctttggacaacgaccagggcatcaatgctgtggtgacataccagctcctt
ggggcagcgacagaccttttcagcatcaacaacagaacaggggttgttttggtgaggcca
ggccaagtgatagacagagaagccttcttgaatccggtcttggaatttctgctggttgca
atggatattggaaagctgaacagcaccgctaggctcactgtgaccattctggatgataat
gacaataggccaacttttcacccggcactgttgactgctcacctgctggaaaacagccct
ccaggtttttctgttctccaggtaatggcaactgacatggatagtggcctcaaccagcag
ctgagctaccggatcgaaagtggagctcaagataggtttgtgatcaacaccaacacaggg
gtgatcagtgtggccaacatcagcatagacagagaagagaaggacaattaccggctgacg
gtgattgctgtggatcgagggactccgcctctctctggcactgccactgtgagcatcctc
attgacgacatcaatgactcccagccagagttcatcaaccccatccagaccgtcagtgtc
cctgaatcggctgaaataggcacggttgttgctgagatgactgcaagagacagagacctc
aatccccggctggaatactacatcattgaaatcctcgccaaagatgataatgatgctctt
gtgcctgaccagcagggagcgtttgcagtggattttagaacaggtgctgtgaaagttaag
tccactctaaatagggagctggtagccacttacgaggtcaccatctctgtctacgacaat
gccagcgacgtggtggaccgctcagttagtgtgccaaacgcaaagctgacagtaaacata
ttggatgtcaacgataatactccccggttccgccctttcggggcactgtttttcaaggaa
aggatcctggaaggggccactccagggaccaccttgatatccgtgtcagctgtagatcca
gacaaaggtgctaatggtcagatcacttatgagctacttgacctttcacctgagggatat
gtccagctggaagacagctcagcaggaaaagtaatttccaacaggacggtggactatgaa
gaagttcaatggctgaacttcactgttcgggcttcagacaatggatctccccggagatca
gccgagataccagtgcacctagaaattgtggatatcaatgacaacaaccccatcttcagc
cagccatcctaccagaaacctgtctttgaggatgtcccactaggcactgtcattctgagg
gtccgtgccacagatgccgattcgggacgctttgcccagattgagtacagcctgggagat
ggggagggcaagtttgggatcaaccccaacacgggagatatctacattatgtcaaccctg
gaccgagaaaagaaagatcattatatgttgactgctgtagccagagacaatccaggagcc
atttctagtgaccgccgagagaactctgtgcaggtggtgattacagttttggatatcaat
gactgccgaccccagtttgccaaaaaacagtatagcaccagtgtgtatgaaaatgagcca
ggagggacttctgtgatcacgatgactgctactgaccttgacgagggagacaacggaatg
gtgacctacaatattgaaggacctggagtagaggccttcagaattcacaaggactcaggg
ctcataacaactcgcaggcgcctacagtcttatgagaggttcaacctcacagttctggcc
actgacaaagggagaccacctctctggggaacaactatgctccaagtagatgttattgac
atcaacgataaccgtccgttatttatccgcccccccaatggaactatcttgcacattaaa
gaggaaatccctctccgatccaacgtgtatgaagtctacgccacagataaggacgagggt
ctcaatggagctgtgcagtacaccttcctcaaaactggcgcagggaacaaagactgggaa
tacttcaccatcgacccaaacagcgggctcatccagacagcaatgaggctggaccgagag
aaacaagctgtgtacagcctgatcattgtggcgtgtgaccaaggccaaccaccttacgag
accatgcagcccctccaggtggctctggatgatatagatgacaacgagcccgtcttcctg
aggccgcctaaagggtctcccccttatcaggttctttctgtgcctgaacactcatgtcct
ggtacagtggtgggcaatgtcactggagcagtagatgctgacgagggctccaatgctatc
gtctattacttcattgcagctggtaacagagagaataatttccagctgagtcgggaagga
aaattgcaggtgttgcgggacttggaccgagagaaagaagctttctactctatcattgtc
aaagcctctagcaataggaactggtcacctccccagggtcgccgggcaaccaggatccaa
gccatggatctcagcactgatgctactctgcaagaagtacggatctttttggatgacatt
aatgaccaacctccccggttcaccaaatcagaatacacggcaggggtagcaacagatgca
aaagtgggttccgaactgatcaagcttgttgcattggatgccgacgtgggaaacaatagc
ctggtcttgtacagcattctgggtatccgttacatcaagcaacattccaacgactctgag
gaggtggccaacattttcagcattggtaacctagacgggattcttcgaacctttgacctc
ttcactgcttacaaccctggctactttgtggtggatgtcatggcctcagacctggctggt
cataatgacactgcggttgtgggggtctatatcctgcgggatgaccaacgggtgaagatt
ataatcaatgagatcccagataaagtacggcaatttgaggaagagttcatcagcctattg
tcaaacatcacgggggccattgtcaatacggatgacgttcagttccacgttgacaaaaaa
ggccgtgtgaactttgcccaaacagaattgctgatccacgtggtgaaccgggaaaccaac
cggattctggatgtagaacgagtaatacagatgattgatgagaataaggagcagctgcgg
aatctcttccggaattacaatgtcttggatgtgcagccagcaatcactgccagggctcca
gacgacatgtcggcgctgcagatggcaataattattctggctattctcctcttcctggca
gccatgttgttcatcctcatgaactggtactacagaacagcttattttgtgtcttgcagg
cacaaaagaaaactgaaagcaattgtggccggttccacaggtaaccgaggtttcatggac
atcatggatatgccaaacacaaataaatattcctttgatggagccaaccctgtgtggctg
gaccctttctgcagaaacctggagctagcagcacaagctgagcatgaggatgacctgcct
gagaacctcagtgaaataacagacctgtggaacagcccagccaggactcacggaacattt
ggccgagagccttcggctgccaaacccgaagaagatcgctatctgagagcagccattcag
gaatacgacaacattgccaagctaggccagatcatgcgagaagggcccatcaagctgatc
cagaacgatttggacgacgacgacgagcaaaggagtccaagccaagggagcctccgcttc
cgacataagcagcccattgagctcaagggacctgatggaatccacgtggtccacgggagt
acaggtactctgctaacctctgacctcaacagtcttcccgaggatgaccagaaggtgctg
ggccgctccttggagacactgactgccgacggtggggcgttctgtgacaagaacgcccgc
accgagtccgccaaatccacccctatgcacaaaatgagggaagtgatcatggagagccca
ctggaaatcacagagttatga
DBGET
integrated database retrieval system
