Proteiniclasticum sp. QWL-01: P6M73_10480
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Entry
P6M73_10480 CDS
T08970
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
proq
Proteiniclasticum sp. QWL-01
Pathway
proq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
proq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P6M73_10480 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
proq03400
]
P6M73_10480 (ligD)
Enzymes [BR:
proq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P6M73_10480 (ligD)
DNA repair and recombination proteins [BR:
proq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P6M73_10480 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
CDC27
Motif
Other DBs
NCBI-ProteinID:
WFF71736
LinkDB
All DBs
Position
2273887..2276904
Genome browser
AA seq
1005 aa
AA seq
DB search
MAKLEEYNRKRDFARTSEPEGKTASTDSTLRFVVQRHDASRLHYDFRLEYDGVLWSWAVP
KGPSYNPRDKRLAVMVEDHPLEYRHFEGTIPEGEYGGGTVQLFDEGYWIPEGNPMDDLQK
GSLKFTLEGNRLKGRWTLIRMKPRAGEEDKNWLLIKEKDSYVQTEDGVTSLLTSVRSGRT
LEEIAAQDPSVTPSPATKGLSAEGTGKNPKPEAKQPKDSTKTKSKADQSAAPKKKKPTND
NKTSKEKTASAARSNEKQTTTEKEVTKNHKSAKLKAASDSTTSNDAKASDQKDQSKDMEI
DKDKDKDKEMDREISEQTPLHSLPFHEVKPMLAVLTKKVPQGSEWIHELKFDGYRILAVI
ENRTARLLTRNGLDWSKKAPELTEALAGWAPDNLILDGELVVFDSKGKSDFQALQSYFKT
PGSKSLDYVVFDLLAQGSEDLRGIPLLERKSRLETLLKNAPEGIHYSYHTEGGSKVFGQA
CDEALEGIISKKKASLYRGTRSMDWLKVKCTNRREFVIGGYTVSDKNTSGISSLLLGYYQ
KDQLIYSGRAGTGFHHKNTQELLAQFRHLQRKTSPFTNTPESRTGEYFYFLKPELVADIQ
FAELTDDGLLRQASYKGLRLDKAASQVTPDETVSEPVMERDLPEPPSKRNTKSRPVSSSA
PKNPLGSRESSDVSQSKDSSDVSQSKDSSHKSQSKESLRASRPKNKEAAAAGSASASRNS
DSVEYDGVTLSSPDKVLFPEDQITKQDVADYYWSVREYILPYLISRPMTLIRCPEQIGED
CFFQKHQTHPIPGMDTVTVPDNDGDETQVMIMNDTTSLMGAVQMGALEFHGWGSQLDHLE
QPDWLVFDLDPAEGLGAEKVRQGVRDLKTLLDEMNLQAYLKTSGGKGYHIVIPLVPSADW
EAVRAFAKLMAQGMEARWPDRYTANMRKDKRKDRIYVDWVRNGRSATSVSIFSLRARKGA
PISWPIGWADLDQFDPATVTIRNWQEYTDTIQEWADFFQTSQKLK
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaattggaagaatacaatcgaaaacgggattttgcccgaaccagtgaaccggaa
ggaaaaacggcttctaccgacagtaccttgcgatttgttgtccagcgacatgacgccagc
aggcttcattacgattttcggctggaatatgatggtgtgctctggtcctgggcagtccct
aagggacccagctataatcccagggacaagcggctggctgtcatggtggaagatcatccg
ttggaataccgccattttgaagggaccattcccgaaggcgagtatggcggcggaaccgtt
cagctctttgatgaaggatactggattccggaaggaaatccaatggatgacctgcaaaag
ggatccttgaaatttaccctggaaggcaatcgcctcaaaggtcggtggacgctgattcgg
atgaaacccagggctggtgaagaagataaaaactggctgttaatcaaagagaaggacagc
tacgttcaaacagaagacggagttacctccctccttacctccgtcagatccggccgaact
cttgaggaaatcgccgcccaggatccgtctgtcactccctctcctgcgacaaaaggtttg
tcggcagagggaaccgggaaaaatccaaaaccggaggcaaaacagccaaaagacagcacc
aagacaaaatcgaaagctgatcagtcagctgcacctaaaaagaaaaaaccgacgaatgat
aacaagacatcaaaagaaaaaacggcatccgccgcgagatccaacgagaagcagaccact
accgaaaaagaggttacaaagaatcataagtcagcgaagctgaaagcagcatcagactcg
acaacctcgaatgacgccaaggcttccgatcagaaagaccagagcaaggacatggagata
gacaaggacaaggacaaggacaaggaaatggacagagaaatatccgaacaaactcccctt
cattccctgccgtttcatgaagtgaaaccgatgctggctgttttgacaaagaaagtgcct
caagggtcagagtggattcatgaactgaaattcgacgggtatcgcattctggcggtgatc
gaaaacagaaccgcccgcctgctcactcgcaatggcctggactggtcgaagaaagctccg
gagcttaccgaagcactggcagggtgggcgccggacaatctgattctggatggtgagctg
gtggtctttgattcaaaaggaaaaagtgatttccaggccctgcagtcctacttcaagact
cctggaagcaagtcgctggattacgtggtatttgatctgttagctcagggcagtgaggat
ttgcgcgggattccccttctagaaaggaaaagccgactggaaacactcctgaaaaacgcg
ccggagggaattcactacagttatcacacggagggtggatccaaagtgtttggtcaagcc
tgtgatgaagcactggaaggcataatttccaagaagaaagcctccctttatcgaggaacc
cgaagcatggactggctcaaggtcaaatgtaccaatcgacgtgaatttgtcatcggtggc
tatacagtatctgacaaaaacacttccgggatttcttcccttctgctgggctattaccag
aaagaccagctcatatacagcggtcgtgccggaacgggctttcatcacaaaaacactcag
gaactcctggctcaatttcgccatctgcagcggaaaacatcgccgttcaccaacacgccg
gaatctcgaacgggtgaatatttttatttcctgaagcccgaactggtcgctgacatccag
tttgcagagttgaccgatgatggtctgctccgtcaggcttcctataaggggctgcggctg
gataaagcggcaagtcaggtaacgcctgacgagacggtgagtgaaccagtgatggaacgt
gatttaccagaacctccttctaagagaaataccaaaagcagaccggtcagctcatctgct
ccgaaaaatccactcggatccagggaatcctctgacgtgtctcagtccaaagactcctct
gacgtgtctcagtccaaagactcctctcacaagtctcaatccaaagaatccctgagggct
tcaagaccaaagaataaagaagcggctgcagcaggcagtgcatcagcttcccgaaatagt
gattcagttgagtatgacggcgtcacattatcctcgccggataaggtcctgtttcccgag
gatcagattaccaaacaggatgttgccgactattactggtccgtcagggaatatatcctg
ccctatctgatcagccgccccatgactttgatccgctgtcccgagcagattggcgaagat
tgcttctttcaaaagcatcagactcacccgatcccggggatggataccgtcactgtaccg
gataatgacggggacgaaacccaggtcatgatcatgaacgacacgaccagcctgatgggc
gcagtccagatgggtgcgctggaatttcatggctggggttcgcaactggaccacttggaa
caaccggactggctggtgtttgatctggatccggcggaaggcctgggagcggagaaggtt
cgacaaggcgttcgagatctgaaaacactgctggatgagatgaatcttcaggcttatctg
aaaaccagcggcggaaaaggctaccatattgtcattcctttggttccttccgctgactgg
gaagctgttcgagcttttgccaaactgatggcacaaggaatggaggcaaggtggcccgat
cggtatacagccaatatgcgaaaagacaaacgcaaagacagaatctatgtggactgggtt
cgcaacggacgcagtgccacttcggttagtatcttttcacttcgcgcccgcaagggagcc
cccatttcctggcccatcggatgggctgatctggatcaatttgatcccgccaccgtgacg
atccgcaactggcaggaatacactgataccattcaggagtgggctgatttctttcagacc
agtcagaagttgaagtag
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