Providencia huaxiensis: CYG50_03185
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Entry
CYG50_03185 CDS
T05654
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prq
Providencia huaxiensis
Pathway
prq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYG50_03185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prq03019
]
CYG50_03185
03009 Ribosome biogenesis [BR:
prq03009
]
CYG50_03185
Enzymes [BR:
prq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CYG50_03185
Messenger RNA biogenesis [BR:
prq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYG50_03185
Ribosome biogenesis [BR:
prq03009
]
Prokaryotic type
rRNA processing factors
CYG50_03185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
AXH61103
LinkDB
All DBs
Position
1959589..1962882
Genome browser
AA seq
1097 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWEAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCTGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVSDIEQRQSHVRVVVVPNDQMQ
TPHFHVIRIRKGEEVNTLSYNLAQYHETETLTQSDETAAERKVPEQPAISAFALQEPVDA
STTVKLKEASTKAPVKPATAEPAKPGLFSKIAAFFKNLFGEEEKVVEKPAPKNRHNNDRR
RNNDRRNNNRRNNNRRDRDDNETRDNRDNRDNRDNRDNRNNRNASSDDANNRNKGRNNKN
TSQQDEQTTETNNRDNQQQRREQRTERRRRQDEKRQQQVAKTQQDSQQNNVEDAVEKEEE
QRPVAPRRQRRQLEQKIRVTDNEQVIAPVETTPEIAPAPITALPAPIAPVSQTEGEVQAE
ERQSAVAQTDDEEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLTKSPMPLVAAVASP
ELASGKVFIHYPIAQSQQESMAIITNEEMLEQQSVNEASVTETANVTASQSHVTVAPVVA
EDVKLESQDTTVETSLVNEPTAVEHIVEPAPVIVEEKTGVSQEVETVEAVKETVAIVADV
IEPQVEIAQTEVAESVTIADEQTAPVIVNEKVNDVVEEVQHAEVAVTTSVEVARIEEVIE
PVAAVEPAAVASSPAVSLHKRHAYSPMTKAPAPTTAAAPFEITEYQREASTFEGKGGAGG
HVASNVATSAMAKPSSH
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcaactcaacaggaagagttgcgtgttgcccttgttgac
gggcaacgcctctatgatttggatattgaaagtcccggtcatgagcaaaaaaaggccaat
atctacaaaggtaaaatcacccgtattgaacctagtcttgaagctgcttttgttgattac
ggcgctgaaagacacggtttccttcctatcaaagaaatcgctcgtgaatacttcccaagt
aactatcactctcaaggccgtcctaacattaaagatgtgttaaaagaaggccaagaagtt
attgttcaagtggataaagaagagcgtggtaataaaggtgcagcgttaacaaccttcatt
agcttggcaggaagttacctcgttttaatgcctaataacccgcgtgcgggtggtatttca
cgccgtatcgaaggggaagaccgaacggaattaaaagaagcgctgtcttctttagaaatc
cctgatggcatggggttaatcgttcgcaccgcaggtgtaggtaaatcggcagaatcactg
caacaagatttactctaccgtttacgtcattgggaagctattcaaaaagcggctgaaaat
cgccctgcaccgttcctaattcaccaagaaagtaacgttattgttcgtgcattccgcgat
tacctacgtccagatattggtgagatcctgatcgacaacccgaaagttgtcgaaatggct
cgtaaccatatcgaagctattggtcgtggtgattttgcaagtaaaatcaaacactacagt
ggtgatgttccactctttagtcactaccaaattgaatcgcaaatcgaatctgcgttccaa
cgtgaagttcgcttaccgtctggcggtgcattagtcattgataccacggaagcgttgact
gctatcgatatcaactcttcacgctcaacacgtggtggtgatatcgaagaaacggcgttc
aatactaacttagaagcagccgatgaaattgctcgtcaattacgtctacgtgacttaggt
ggtttgattgttatcgactttatcgatatgacgccagttaggcatcaacgtgaagttgaa
aaccgcttacgtgaagctgtgcgccaagaccgtgctcgtattcaaattgcccgtatctct
cgttttggtttattggagatgtcacgtcaacgcttgagcccttctttaggtgaatcaagc
caccacgtatgccctcgctgtacaggaacgggaaccattcgtgacaacgaatcactttct
ctgtctgttcttcgccttattgaagaagaagcgctgaaagaaaatacccatgaggtacat
gcgattgttcccgtacaaattgcatcttacctattgaatgaaaaacgcaaagcggtcagt
gatatcgaacaacgccaaagccatgttcgtgttgtagttgttcctaatgaccaaatgcaa
actcctcacttccacgtgatccgtatccgtaaaggtgaagaggtaaatactctaagctat
aacttagctcaatatcacgagacagaaactttaacgcaaagtgatgaaactgctgctgag
cgtaaagtacctgagcaacctgcaatttctgcttttgcactgcaagagcctgttgatgca
tctacaactgttaagttaaaagaagcctctacaaaagcgccggttaaaccagcaacagca
gaaccagcaaaaccaggtttatttagcaaaattgctgctttcttcaagaacctattcggt
gaagaagaaaaagtggtagagaagcctgcaccaaaaaatcgtcataataatgatcgtcgt
cggaacaatgatcgtcgcaataataatcgccgtaataataatcgtcgtgaccgcgatgat
aatgaaacacgcgacaatcgtgacaatcgtgacaatcgtgataaccgcgacaatcgcaat
aaccgcaatgcctcatcggatgatgcgaataatcgtaataaaggccgtaataataagaat
acgagccaacaagacgaacaaacaactgagactaacaatcgtgacaaccagcagcaacgt
cgcgagcaacggactgagcgtcgccgtcgccaagatgaaaaacgtcaacagcaggtggct
aaaacccagcaagattctcagcaaaataatgttgaagatgcagtggaaaaggaagaagaa
caacgtcctgttgctcctcgtcgtcaacgtcgtcaattagagcaaaaaattcgtgttact
gataacgagcaggttattgctccagttgaaacgacacctgaaatagcgcctgcgccaatt
actgcattgcctgcaccaattgccccagtgagccaaactgaaggtgaagtacaagcagaa
gagcgtcaaagcgctgtggcacaaactgatgacgaagaaaagcaagacaccatcattcca
cgtcgttcacgtcgttcaccacgtcatttacgtgtcagtgggcaacgtcgtcgtcgctac
cgtgatgaacgtcatttaacaaaatcaccaatgccattagttgctgcagttgcctcacct
gagctcgcatctggcaaagtatttattcattacccgattgcccagtctcaacaagagagc
atggcaatcatcactaatgaagaaatgcttgaacaacaaagtgttaatgaagcttctgta
actgaaactgcaaatgttaccgcgtcacaaagtcatgtgactgttgcccctgtcgtcgct
gaagacgttaaactcgagtctcaggacacgactgtagaaacttctttagttaacgaacca
accgctgtcgagcacattgttgaaccagctccagttattgtcgaagagaaaactggtgtt
tcgcaagaagttgaaaccgtcgaagctgtaaaagaaactgtagcaatagtggctgacgtt
attgagccacaggttgaaatagctcaaacagaagtggctgaaagcgttactatcgcggac
gaacaaacggcgcccgttattgttaatgaaaaggtcaatgacgtggttgaagaagtacag
catgctgaagttgctgtcactacatcagttgaggttgcccgtatcgaggaagttatcgaa
cctgttgcagcggttgagcctgctgcggtagcaagcagcccagcggtcagcttacacaaa
cgccatgcttattctccaatgacaaaagcgccagcacctacaactgccgctgcaccattt
gagataacagagtatcagcgtgaagcctctacctttgaaggtaaaggtggcgcaggtggc
catgttgcttcaaacgtcgcaacctctgcaatggcaaaaccatctagtcactaa
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