Xylanibacter ruminicola: PRU_0031
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Entry
PRU_0031 CDS
T01212
Symbol
recQ_1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pru
Xylanibacter ruminicola
Pathway
pru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PRU_0031 (recQ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pru03019
]
PRU_0031 (recQ_1)
03400 DNA repair and recombination proteins [BR:
pru03400
]
PRU_0031 (recQ_1)
Enzymes [BR:
pru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRU_0031 (recQ_1)
Messenger RNA biogenesis [BR:
pru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PRU_0031 (recQ_1)
DNA repair and recombination proteins [BR:
pru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PRU_0031 (recQ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
Helicase_C
RQC
RecQ_Zn_bind
HRDC
HTH_40
ResIII
TraB_PrgY_gumN
DUF5868
Motif
Other DBs
NCBI-ProteinID:
ADE83234
UniProt:
D5EVA2
LinkDB
All DBs
Position
36593..38761
Genome browser
AA seq
722 aa
AA seq
DB search
MNLTAALKKYFGFDTFKGDQERIIQNLMDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIV
ISPLIALMKNQVDVITSMSETEGTAHYLNSSLNKAAIDQVKSDVMAGRTKLLYVAPESLT
KEENVEFLRSVKISFYAIDEAHCISEWGHDFRPEYRKIRPIVNEIGKAPIIALTATATDK
VRTDIKKNLGIVDAAEFKSSFNRPNLYYEVRPKTANVDKDIIKFIKQHPGKSGIIYCLSR
KKVEELAEILRVNGIKAAAYHAGLDSNTRSNTQDEFLMENIDVIVATIAFGMGIDKPDVR
FVIHYDIPKSLEGYYQETGRAGRDGGEGICLAFYSYKDLQKLDKFMEGKPVAEQDIGRQL
LVETAAYAETSVCRRKMLLHYFGETYEKDNCGNCDNCLHPKTKIEAQEQLVIVLKTIQVI
KENFRSDYVIDFIIGKPTEEILAHHHDEQELFGAGADDDEKIWNPVIRQALIAGYLRKEV
ENYGLLKLTAAGKKFIKAPKSFMIVKDAEFNDDYESADQEGGLSALDPVLTAMLLDLRKK
VSRQLGRPPYVIFQDVSIDQMATDYPITLEELKCIQGVGEGKVKQPYAQEFVDLIKAYCE
ENEIERQVDMRVRTVAKKSMLKVKIIQSIDRQIALDDIAEAQGIEFEELLDEVEAIVYSG
TKLDIDYFLEEVMDEDHVDDIYDYFAESETDKLSVAEEELGEDYSEDEIRLVRIKFISEM
AN
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcacagcagccctgaagaagtactttggattcgacacattcaaaggcgatcag
gagcgtattatccagaacctgatggatggcaacgatacctttgtgctgatgccaacaggc
ggtggaaaatcattgtgctaccagttgccctcgctactgatggagggtacagccattgtg
atttcgccgctgattgcgctgatgaagaatcaggtggatgtgattaccagcatgagcgaa
accgagggtactgcccactacctgaactcgtcgctgaacaaagcggctattgatcaggtg
aaatcggatgtgatggctggtagaaccaaactgttatatgttgctccagagtcgttgaca
aaagaagagaacgtagagttcctgcgttcggttaagatatctttctatgccatcgatgag
gctcactgtatttcagaatggggtcacgatttccgtcctgagtatcgcaaaatccgtcct
atcgtaaatgaaataggtaaggcacctatcattgcgcttacggctactgctaccgataag
gttcgtactgatatcaagaaaaaccttggtattgtggatgctgctgagttcaaaagctcg
ttcaaccgtccgaatctgtattacgaggtacgtccaaagactgcgaatgtagataaggat
atcatcaagttcattaagcagcacccaggaaagagcggcattatctactgcctgtcgaga
aagaaggtagaagagttggccgagatcctgcgtgtgaatggtattaaggctgctgcctat
catgccggacttgactcgaatacacgttcgaatacccaggatgagttcctgatggagaat
atcgatgtgattgtggctaccatcgcctttggtatgggtatcgataagcccgatgtgcgc
tttgtgattcactacgacatacctaagtcgttggaaggctattatcaggaaactggtcgt
gccggacgtgacggtggcgagggaatctgcctggccttctactcgtataaggacttgcag
aagctcgataagtttatggagggtaaacctgtggccgagcaggatatcggtcgtcagttg
ttggttgagaccgctgcttatgctgagacgtcggtttgtcgccgtaagatgttgttacac
tatttcggtgagacctacgagaaggataactgtggtaactgcgacaactgtctgcacccc
aagaccaagatcgaagctcaggaacagttggttattgtactgaagacgatccaggttatc
aaggagaatttccgctcggactatgtgattgactttattatcggtaaacctaccgaagag
attctggctcatcatcacgacgagcaggaactgtttggtgctggagccgatgacgatgag
aagatttggaacccagtaatccgtcaggcgctgatagccggctacctgcgtaaagaggta
gagaactacggactgctgaaactgactgccgctggtaagaagtttataaaggctcccaaa
tcgtttatgatcgtgaaggatgctgaatttaacgacgactatgagtcggctgatcaggag
ggtggactaagcgcccttgatcctgtgctgacggctatgttgcttgaccttcgtaagaag
gtttcgcgacagttaggtcgtccaccttacgttatcttccaggatgtgtcgatcgaccag
atggcaaccgactatcccatcacactcgaggagctgaagtgtatccagggtgtgggcgaa
ggtaaggttaagcagccttatgctcaagagtttgtagacctgattaaggcctactgcgaa
gagaatgagattgaacgacaggttgacatgcgcgtgcgtaccgttgctaaaaagtcaatg
ctgaaagtcaagattatccagagtatcgatcgtcagatagcactcgacgatatcgctgaa
gcacagggtattgagttcgaggaactgctcgacgaggttgaggcaatcgtttatagcggt
accaaactggatattgattacttccttgaggaggtaatggatgaagatcacgtagatgat
atctacgactactttgccgagagcgaaaccgataagctgagtgtggctgaggaagagctt
ggcgaggactactcggaagacgaaatccgactggtacgcattaagttcatttcggagatg
gcgaactaa
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