Pseudomonas rhodesiae: HRH33_08435
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Entry
HRH33_08435 CDS
T07097
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prx
Pseudomonas rhodesiae
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prx03032
]
HRH33_08435 (topA)
03400 DNA repair and recombination proteins [BR:
prx03400
]
HRH33_08435 (topA)
Enzymes [BR:
prx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HRH33_08435 (topA)
DNA replication proteins [BR:
prx03032
]
Prokaryotic type
DNA Topoisomerases
HRH33_08435 (topA)
DNA repair and recombination proteins [BR:
prx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HRH33_08435 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QKJ72602
LinkDB
All DBs
Position
1867064..1869685
Genome browser
AA seq
873 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNEYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
GPVLTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVAMARTYIESEFGKKYLPEKPN
VYSSKEGAQEAHEAIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTV
TVAASDFELRAKGRILKFDGYTRVMPQIAKPGDDDVLPDMAQGDTLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAESPENGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKHKLHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVMEIVPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQSEVDGKPTGWKAFYEGGKWKVEDKRQGA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaacgagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggctagcgccagcaaggagccagccgctaagcgcggcaaggccgctgcgggcgaa
ggtccggtgctcacgcccaaggagaaagcgcgcaagcagctggtctcgcgcatgggtgtg
gacccggaccatggctggaaggccaagtacgagatccttcctggcaaggaaaaggtcatc
gaagagctgcgccggctcgccaaggatgctgacaccatctatctcgcgacggacttggac
cgcgaaggggaggccattgcctggcacttgcgggaagccatcggcggtgacgacagccgc
tacaagcgcgtcgtgttcaacgaaatcaccaagaaagccatccaggaagccttctccaag
ccgggcgagttggatatcgaccgcgtcaatgcccagcaggcacggcgtttcctcgatcgc
gtggtgggttatatggtctcgccgctgctgtgggccaagatcgcccgtggcctgtccgcc
ggccgtgtgcagtcggttgcggtgaagctggtggtggagcgtgagcgtgagattcgtgcg
ttcatccctgaagagtactgggaagtccacgccgacctgggtaccgccaagggcgccaat
gtgcgctttgaagtggcccgcgagaaaggcgaagccttcaagccgctgaacgaagcccag
gccatggccgcgctggaaaagctcaaggcatccagctacagcatcgtcaagcgtgaagac
aaaccgaccagcagtaagccgtcggcaccgttcatcacctccaccctgcaacaggccgcg
agcaaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggttacatcacttatatgcgtaccgactccaccaacctgtcggtggacgcggtcgcc
atggcgcgaacctatatcgaaagcgagttcggcaagaagtacctgccggagaagcctaac
gtctatagcagcaaggaaggcgcacaggaggctcacgaagcgattcgtccttccgacgcc
aataccgagccaagcaagctgagcggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcctggcctgccagatgctgccggcgcagtacctgtccaccacggtt
accgtggcggcctccgacttcgagctgcgtgccaagggccgcattctcaagttcgacggc
tacacccgcgtgatgccgcagatcgccaagcctggtgacgacgatgtgctgccggacatg
gctcagggcgatacgttgaagctgatcaagctcgatccgtcccagcacttcaccaagccg
ccggcgcgttattcggaagccagcctggtcaaggagatggaaaagcgcggtatcggtcgc
ccttcgacctacgcggcgatcatttccaccattcaggaccgtggctatgtggcgctgcat
aaccgtcgtttctattcggaaaagatgggtgacatcgttaccgagcgtctctccgagagc
ttctccaacctgatggattacggtttcactgccggcatggaagagaatctcgacgacgtg
gcccagggcgagcgcgactggaaaaacgtgctggacgagttctacggagacttcaagaag
aagctcgaggtggccgagagccccgagaacggcatgcgcgccaaccagccggtgatgacg
gatatcccgtgccagacctgcggtcggccgatgcagattcgcacggcgtccaccggtgtg
ttccttggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccacggtcaac
ctggtgccgggcgatgaaatcgcggctgatgacgagggtgagtccgagtcgttggtgctg
cgcggcaagcaccgctgcccgatctgcagcacggcgatggatgcctacctgttggatgag
aagcacaagctgcatatctgcggtaacaaccccgattgcaacggctacgagatcgaagag
ggcacctaccgcatcaagggctacgaaggtccgagcctggaatgcgacaagtgcggcagc
gagatgcagctcaagactggccgcttcggcaagttctttggctgcaccaacccgacgtgc
aagaacacccgcaaactgctcaagagcggcgatgcggcgccgccgaagatggacccggtg
aaaatgccggagctcaagtgcgaaaaggtcaacgacacctacattctgcgtgacggtgcc
tctggcttgttcctggcggccagccagttcccgaaaaaccgcgagacccgtgcgccgtta
gtgatggaaatcgtgccgcacaaggacgagatcgatcctaagtaccacttcctgtgtgaa
gcgccgaagaaggatccggatggtcgcccagccgtgattcgctacagccgcaagaccaag
gagcagtacgtgcagtccgaggtcgacggtaagccgaccggctggaaagccttctatgaa
ggtggcaagtggaaggtcgaggacaagcgtcagggcgcctga
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