Pseudomonas rhodesiae: HRH33_08480
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Entry
HRH33_08480 CDS
T07097
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prx
Pseudomonas rhodesiae
Pathway
prx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HRH33_08480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prx03400
]
HRH33_08480 (mfd)
Enzymes [BR:
prx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HRH33_08480 (mfd)
DNA repair and recombination proteins [BR:
prx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HRH33_08480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QKJ72610
LinkDB
All DBs
Position
complement(1877415..1880864)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPQLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGTGRERFPAQALPDL
AIEAKANQPLEALSTFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKNVDSWPDFVAS
KDRLAITIAPLDEGLLLNDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITGDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERADERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcaactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgcagccaagcgcttt
accctgctgcttaccgccgatagccaaagcgccgaacggttggagcaggagctgagcttc
ttcgcccccgatttgccggtgctgcattttcccgattgggaaaccctgccttacgacctg
ttctcaccgcatcaggacatcatttcccagcgcatcgccagcctgtaccgtctgccggaa
ctggcccacggcgtgctcgtggtgccgatcaccacggcgctgcaccgcctggcgccgacc
aagttcctgctgggcagcagtctggtgctggatgtcggccagaagctcgatgtcgaacag
atgcgcacgcgcctggaagccagcggctaccgctgtgtggacaccgtgtacgagcacggc
gagttcgcagtgcgtggcgcgctgatcgacctgttcccgatgggcagcaagttgccttat
cgcatcgatctgttcgacgacgaaatcgaaaccctgcgcacctttgatccggaaaaccag
cgctccatcgacaaagtcgaatcgatcaagctgctgccggcgcgggaatttccgttgcaa
aaagatgcggtgacccggttcaaagcgcgtttccgtgaacgcttcgacgtcgacttccgc
cgctgcccgatcttccaagacctgagcagcgggattacacccgccggtatcgagtactac
ctgccgctgtttttcgacgaaacctccaccctgttcgactacctgccccaggacacccaa
gtgttctcgctgccgggcatcgagcaggccgcggaaaacttctggaacgacgtgcgcaat
cgctacgaagagcgccgcgtcgacccttcccgtcctttattgccgcccgccgagctgttc
ctgccggtggaagattgtttcgcgcgcctgaaaaactggccgcgggtcgtcgccagccag
caggacgtggatgccggcactggccgcgagcgcttccccgcgcaagcgctgcctgacttg
gcgattgaagctaaggccaaccagccgctggaagcgctgtccaccttccttggcgacttc
ccgggccgcgtgttgtttaccgccgaatccgccgggcgccgcgaagtgctgctggagttg
ctcgaacgcctcaaactgcgcccgaagaacgtcgacagttggccggacttcgtcgcgagc
aaggatcgcctggcgatcaccatcgcccccctggacgaaggcttgctgctgaatgaccca
gccctggcgttgatcgccgagagcccattgttcggtcaacgcgtgatgcagcgtcggcgc
cgggaaaaacgcgcggacgccaacaacgacgcggtgatcaaaaacctcaccgaactgcgc
gaaggcgcgccggtggtgcatatcgaccacggtgtcggccgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctatgtgccggtggccaacctgcacctgattgcgcgttacaccggcagcgacgacgcc
ctggcgccgctgcatcgcctgggttccgagacctggcaaaaagccaagcgcaaggccgcc
gagcaggtgcgcgatgtggccgccgagctgctggacatctacgcccggcgcgcggcgcgc
gaaggttatgcattcgccgacccgaaagccgactacgccaccttcagcgccggtttcgcc
tttgaagaaaccccggatcagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgtggcgacgtgggcttcggcaagaccgaagtggcc
atgcgcgccgccttcatcgcggtgcacggcggcaagcaagtggcaattctggtgcccacc
accctgctcgcccagcagcactacaacagctttcgcgatcgctttgccgactggccggtg
accgtggaagtgatgagccgcttcaagtccgccaaagaagtgaacgccgccgtcgccgac
ctggccgaaggcaagatcgatatcgtgatcggcactcacaagctgctgtcggacgatgtg
aagatcaaaaacctgggcctggtgatcatcgacgaagaacaccgtttcggcgtgcgccag
aaagagcagctcaaggccctgcgcagcgaagtcgatatcctcaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgtgatctgtccatcatcgccacg
ccaccggcgcgtcgcctgtcagtgcgcacgttcgtgatggagcagaacaaaagcacggtc
aaggaagcgctgctgcgcgagttgctgcgcggcggccaggtgtattacctgcacaacgac
gtcaagactatcgagaaatgcgctgccgacctcgccgaactggtgcccgaagcgcggatc
gccatcggccacggccagatgcgcgagcgcgaactcgaacaggtaatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcgcaactgcaccag
ttgcgcggccgggtcggacgcagccatcaccaggcctacgcgtacttgctcaccccgcca
cgccagcagatcaccggcgacgcggagaaacgcctggaagccatcgccaacacccaggac
ctcggcgccggctttgtgctggccaccaacgacctggaaatccgtggcgccggcgaactg
ctgggtgacggccagagcgggcagatccaggccgtgggtttcaccttatatatggaaatg
ctcgagcgggcggtcaaagccatccgcaagggcgaacagccgaacctcgatcaacccttg
ggtggcggtccggaaatcaacctgcgcctgccggcgttgattcccgaggactacctgccg
gatgtgcacgcgcgactcatcctgtacaaacgcatcgcctcggccaccgatgaagagggg
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctggtacgcctgaccctactcaaattgcaggccgagcaactggggatcaagaaggtc
gacgccgggccccagggcgggcgtatcgaattcgaagcgcagacgccggtcgacccgctg
gtactgatcaaactgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaaattcatggtgccgatggaacgcgccgacgaacgcttcaataccctggaggcgctg
ttcgagcgccttatcccgaaatctgtttga
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integrated database retrieval system
