Paraburkholderia sabiae: QEN71_22140
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Entry
QEN71_22140 CDS
T09203
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psaa
Paraburkholderia sabiae
Pathway
psaa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QEN71_22140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psaa03400
]
QEN71_22140 (ligD)
Enzymes [BR:
psaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QEN71_22140 (ligD)
DNA repair and recombination proteins [BR:
psaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QEN71_22140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WJZ72836
LinkDB
All DBs
Position
1:complement(4913245..4916097)
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AA seq
950 aa
AA seq
DB search
MTDKLETYQRKRRFNETPEPSGVAGRAKSTKRATSAKAPARKTAKQHELSFVIQEHDARR
LHYDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIEYGSFEGDIPEGNYGAGSVI
VWDRGTWEPVGGEAGGREAYQAGKLKFHLNGHKLHGGWTLVRSHMRGSGDKEQWLLIKER
DDEARSEADYDVLEARQGSVLSDAPGARGGMNGAYGADGAGKAVAGKTKEERANASVKAS
KAASSRKAKGTPDDRPDIVATRNAQSLRELAEHPSIEGAVEAKLPAALKPQLATLVDSAP
ASDDWLYEIKFDGYRVLARIDRTSKEPVKIFTRAGNDWSAKFSKQVKAIANVGVDSAWLD
GEAVVLDSNGVPNFQALQNAFDANRPQDMTLYLFDLPYLNGYDLRGVPLEQRRAILRALL
ETVGDDSLRFSSDFGFDADQLLKSACDMQLEGIIGKRRDSLYVSGRSPAWIKLKCRRRQE
FVIGGYSEPAGSREAFGALLLGVYDTKGKLQYAGRVGTGFDATKLRSIKKALDARETATM
PFASEPRERSRTPVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAKQIVHEAPQK
GDDVQHIMEESGAGPAKKKRVSKSKTAEVQAKAQPQAEPKATSKARSSKAGTATVSGVRI
SHPDRVIDKSTGASKLELAEYYASVASWMLPFLKDRPVALVRAPEDIGGELFFQKHSQKL
AIPNITQHPGLDPDHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPDRMVFDLDP
DPALGWKRMIEAAQLTRELLDELGLASFCKTSGGKGLHVVVPIAKQLGWDEVKAFSQAVA
QHMATALPKHFAAKMGAQNRKGKIFVDYLRNGRGSSTVCAYSLRARPGLGVSVPLAWDEV
PGTTAGDQWNIANVHERLDALKSDPWADYAKTKQRITAAMRRRLDTAEHD
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagctcgagacctatcagcgcaagcgccgcttcaatgaaacgccggagccg
tcgggtgtcgccggacgcgcaaagagcacgaagcgcgcaacgtccgcgaaggccccggca
cggaagacggcgaagcagcacgagttgtcgttcgtgattcaggaacacgacgcacgacgc
ctgcactacgacttccgtctcgaactcgacggcacgttgaaatcgtgggccgtgccgaag
ggaccgagcctcgacccgtccgtcaaacggctcgccgtgcatgtcgaagatcacccgatc
gaatacggctcgttcgaaggcgacatccccgagggcaattacggcgcggggtcggtgatc
gtctgggatcgtggcacgtgggaacccgtgggcggcgaagcgggcggacgtgaagcgtac
caggcgggcaagctcaagttccatctgaacggccacaagctgcacggcggctggacgctc
gtgcgcagtcacatgcgcggcagcggcgacaaggagcagtggctcctcatcaaggagcgc
gacgacgaagcgcgaagcgaagccgactatgacgtactcgaagcgcggcaaggcagcgtg
ctgtcggatgcgccgggcgcgcgcggcggaatgaatggtgcgtatggtgcggatggcgca
ggcaaagcggtagcaggcaagaccaaagaggaacgcgcgaacgcgtcggtgaaggcgtcg
aaggctgcttcgtcgcgcaaagccaaaggcacgcccgacgaccgtcccgacatcgtcgcg
acgcgcaacgcgcaatcgctgcgcgaactggctgaacatccgtcgatcgaaggcgccgtc
gaggcgaagttgcccgccgcgctcaagccgcaactggcgacgctcgtcgacagcgcgccc
gccagcgacgactggctctacgaaatcaagttcgacggctatcgcgtgctggcgcgcatc
gatcgcacgtcgaaggaacccgtgaagattttcacgcgcgcgggcaacgactggagcgcg
aagttcagcaagcaggtcaaggcgatcgcgaacgtcggcgtcgacagcgcgtggctcgat
ggcgaagccgtggtgctcgacagcaacggcgtgccgaatttccaggcgctgcaaaacgct
ttcgacgcgaaccgtccgcaagacatgacgctgtatctgttcgacttgccttatctgaac
ggctacgacctgcgcggtgtgccgctcgagcagcgtcgcgcgattctgcgcgcgctgctc
gaaaccgtcggcgacgattcactgcgcttttcgtcggacttcggtttcgatgccgatcag
ttgctgaagagcgcgtgtgacatgcagctcgaaggcatcatcggcaagcggcgcgacagc
ctttatgtgtcgggccgctcgcccgcgtggatcaagctcaagtgcaggcgtcgtcaggag
ttcgtgatcggcgggtattcggagccggcgggcagccgcgaagcgttcggcgctttgctg
ctcggcgtgtacgacacgaagggcaagctgcaatacgcgggacgcgtcggcaccggtttc
gacgcgaccaaactgcgctcgatcaagaaggcactcgacgcgcgcgaaacggcgacgatg
ccgttcgcgagcgaaccgcgcgaacgaagccgcacgcccgtacattgggtgaagccggaa
ctcgtcgccgaatgcaacttcgcggaatggacgagcgacggcgtcgtgcggcaggcgtcg
ttcgtcagcttgcgcagcgacaagcccgcgaagcagatcgtccacgaagcgccgcaaaag
ggggatgacgtgcagcacatcatggaagaatcgggagccggtccggcgaagaaaaagcgt
gtgtcgaagtcgaagacggcggaggttcaggctaaggctcagccgcaggccgaaccgaag
gcaacttcaaaggccagatccagcaaggcgggcacggcgaccgtttccggcgttcgcatc
tcgcatcccgatcgcgtgatcgacaagagcacgggcgcgagcaagctcgaactcgccgaa
tactacgcctcggtggcatcgtggatgctgccgtttctgaaggaccggcctgtcgcgctg
gtgcgcgcgccggaggatatcggcggcgaactgttctttcagaagcacagccagaagctc
gcgattccgaatatcacgcagcatccgggactggaccccgatcatccgccgctgctgacg
atcgagagcgaagcggcgctcgtcggcgcggcgcagatgggcacgatcgaactgcataca
tggaacgcggtggccgcgaacatcgagaagccggaccgcatggtgttcgatctcgacccg
gacccggcgctcggctggaagcggatgatcgaagcggcgcaactcacgcgcgaactgctc
gacgaactcggcctcgcgtcgttctgcaagacgagcggcggcaaggggctgcatgtcgtc
gtgccgatcgcgaaacaactgggctgggacgaagtgaaggcgttctcgcaggccgtcgcg
cagcacatggcgaccgcgctgccgaagcacttcgccgcgaagatgggcgcgcagaatcgc
aagggcaagattttcgtcgactatctgcgcaacggtcgtggatcaagcaccgtctgcgcg
tattcgctgcgcgcgcggcctgggctgggcgtgtcggtgccgctggcatgggacgaagtg
cccggcacgacggcgggcgatcaatggaacatcgccaacgtgcatgagcggctcgatgcg
ctgaaaagcgatccgtgggccgattacgcgaagacgaagcagcgcatcacggccgcgatg
cggcgcaggctcgatacggcggaacacgattga
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