Pseudomonas salmasensis: HU731_023635
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Entry
HU731_023635 CDS
T07619
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psam
Pseudomonas salmasensis
Pathway
psam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HU731_023635 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psam03400
]
HU731_023635 (mfd)
Enzymes [BR:
psam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HU731_023635 (mfd)
DNA repair and recombination proteins [BR:
psam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HU731_023635 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
QXH77396
UniProt:
A0AA92RPW8
LinkDB
All DBs
Position
complement(5258827..5262276)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPASALPDL
AIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLRLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFA
FEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLSDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
AIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEERFNTLEAL
FERLIPKSV
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgctactccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccattgccgaggctgccagcgcagccaagcgcttt
accctgctgctcaccgccgacagccaaagtgccgaacggttggagcaggagctgagcttc
ttcgccccggatttgccggtgctgcattttcccgactgggaaaccctgccttacgatctg
ttctcgccgcaccaggacatcatctcccagcgtatcgccagcctgtaccgcttgccggaa
ctggcccacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcaccgacc
aagttcctgctgggcagcagcctggtgctggacgtcggccagaagctcgatgtggagcag
atgcgcacgcgcctggaagccagcggctaccgctgcgtcgacacggtgtacgaacacggt
gagttcgcggtgcgcggcgccttgatcgacctgttcccgatgggcagcaagttgccgtac
cgcatcgacctgttcgatgacgagatcgagacgctgcgcaccttcgatccggagaaccag
cgttccatcgacaaggtcgattcgatcaagctgctgccggcgcgggaattcccgctgcaa
aaagacgcggtcacgcgcttcaaggcgcgctttcgtgaacgctttgacgtggatttccgt
cgttgcccgatcttccaggatttgagcagcggcatcacgcccgccggtatcgagtactac
ctgccgttgttcttcgacgaaacttccaccctcttcgactacctgccccaggacacccag
gtgttctcgctgccgggtatcgaacaggcggcggaaaacttctggaacgacgtgcgcaac
cgctatgaagagcgccgcgtggatccgtcccggcctttattgccgcccgctgagctgttc
ctgccggtggaagactgcttcgcgcgcctgaaaaactggccgcgtgtggtcgccagccag
caggacgtggacgctggcagtggccgtgagcgcttcccggcgagcgcattgcccgatttg
gcgatccaggccaaagccacacaaccgctggaggcgctgtccaacttcctcggtgacttc
cccggccgcgtgctgttcaccgccgaatccgccgggcgccgcgaagtgctgctggagctg
ctggaacgcctgaagctgcggccgaaaaccgtcgacagctggccggattttgtcgccagc
aaagagcgcctggcgatcaccatcgcgccgctggacgaagggctgcggctggatgacccg
gcgctggccttgatcgccgaaagcccgctgttcggccaacgcgtgatgcaacgccgacgc
cgggaaaaacgcgccgacgccaacaacgacgcggtgatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcatatcgaccatggcgtggggcgctacctgggcctgcagacc
ctggagatcgacaaccaggccgccgaattcctcaccatggaatacgccgagggcgccaag
ctctacgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgatgacgcc
ttggcgccgttgcaccgcctgggctccgagacctggcagaaagccaagcgcaaggccgcc
gaacaggtacgcgacgtggccgccgaactgctcgacatctatgcgcgccgcgccgcccgc
gaaggttacgcgttcgccgacccgaaagccgactacgccactttcagcgccggttttgcc
ttcgaagaaacccccgaccagcaaaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagccgatggaccgcctggtgtgtggcgacgtgggctttggcaagaccgaagtggcc
atgcgtgcagcctttattgcggtacacggcggtcgccaagttgcgatcctggtgcccacc
accctgctcgcccagcagcactacaacagttttcgcgaccgctttgccgactggccggtg
accgtggaggtgatgagccgcttcaagtccgccaaggaagtgaatgccgccgtcgccgat
ctggccgaaggcaagatcgacatcgtgatcggcacccacaagttgctgtcggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagagcaccgcttcggtgtgcgccag
aaagaacagctcaaggccctgcgcagtgaagtcgacatcctcaccctcaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccaccggcgcgccgtttgtcggtgcgcaccttcgtgatggagcagaacaagagcacggtc
aaggaagccctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgat
gtgaaaaccatcgagaaatgcgccgccgacctcgccgaactggtaccggaggcccgcatc
gccatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgaacgcgccgacaagttcggcctggcgcagctgcaccaa
ttgcgcggccgcgtcgggcgcagtcaccaccaggcctatgcctacctgctcacaccgccg
cgccagcagatcacctccgatgcggaaaaacgcctggaagcgatcgccaatacccaggac
ctcggcgccggttttgtactggccaccaacgacctggaaatccggggtgccggcgagttg
ctcggcgacggccagagcgggcagatccaggcggtgggtttcacgctgtatatggagatg
ctcgaacgtgcggtgaaagccatccgcaagggcgagcaaccgaacctcgaccaacccttg
ggcggcggcccggagatcaacctgcgcttgccggcgttgattcccgaagactacctgccg
gatgtgcatgcacggttgatcctgtacaagcgcattgcctcggcggccgacgaagaaggc
ctcaaggacttgcaggtagagatgatcgaccgcttcggcctgctgccggagccgaccaag
aacctggtgcgcctgactctgctcaagttgcaggccgagcagttgggcatcaagaaagtc
gacgccgggccgcaaggcgggcgtatcgaattcgaagcgcagacgccggtcgacccgttg
gtgctgatcaagctgatccagggccagcccaaccgctacaagttcgaaggggctacgctg
ttcaagttcatggtgccgatggaacgcgccgaagaacgcttcaacaccttggaggcgctg
tttgaacgcctcattccgaaatccgtttaa
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integrated database retrieval system
