Pseudomonas savastanoi pv. savastanoi: PSA3335_19440
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Entry
PSA3335_19440 CDS
T07948
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psav
Pseudomonas savastanoi pv. savastanoi
Pathway
psav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSA3335_19440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psav03400
]
PSA3335_19440
Enzymes [BR:
psav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSA3335_19440
DNA repair and recombination proteins [BR:
psav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSA3335_19440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
ARD13040
LinkDB
All DBs
Position
4260414..4263872
Genome browser
AA seq
1152 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELEHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQDVDVDAGAGRERFPAQTLP
DLSIEAKASQPLAALSTFLDDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWQDFV
DGKDRLAITIAPLDDGLLLEQPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLT
ELREGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANMHLIARYTGS
DDESAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSA
GFPFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAIL
VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQ
DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI
IATPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE
ARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQ
LHQLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGA
GELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEA
YLPDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPEPTKNLVRITLLKLHAEQLGI
KKIDGGPQGGRIEFATETPVDPLTLIKLIQSQPNRYKFEGATLFKFLVPMERPEERFNTI
EALLERLTPKTA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcatctttctgccgctgcaggcaaacaacactggggcaat
cttcccggtgccgcactgagcctggccattgccgaggccgccagcgcagccaagcgcttt
accctgctactgaccgccgacagccagagcgccgagcggctggagcaggagctgaagttt
ttcgcgcccacgctgccggttctgcacttcccggactgggaaaccctgccctacgacctg
ttttcgccgcaccaggacatcatttcccagcgcatcgccagcctttatcgcctgccggag
ctggagcatggcgttttggtagtaccgatcacgaccgccctacacagactcgcgccgacc
aaattcctgctcggcagcagcctggtgctggatgtcggccagaagcttgatgtggaagcc
atgcgcacgcgcctggaagccagcggctatcgctacgtggatacggtttacgagcacggc
gagttcactgtgcgcggcgcattgatcgacctgttcccgatgggcagcaagctgccgttc
cgtattgacctgttcgacgatgaaatcgaaaccctgcgcaccttcgatccggacacgcag
cgttccatcgacaaggtcgagtcggtgcgcttgttgcctgctcgtgagttcccgctacaa
aaagaagaagtcacgcgcttcaaggcacgctttcgcgagcgtttcgatgtggacttccgg
cgcagcccgattttccaggacttgagcagcggcatcacgcctgccggtatcgagtactac
attccattgttcttcgaagaaacctcgacgctgttcgattatctgccgcaggacactcag
gtgttttccctgccgggtatcgagcaggccgcagaaaatttctggaacgacgtgcgcaac
cgctatgaagaacgccgcgtcgaccctgcacggccactgctgccgccggccgagctgttc
ctgccggtggaagactgctttgcacgcttgaaaaactggccgcgcgtggtggccagccag
caggatgtcgatgtcgatgccggagccggacgcgaacgcttcccggcccagaccctgccg
gatctgtccattgaagccaaggcgagtcagccattggcggcattgtcgacatttcttgat
gacttccccggtcgcgtgctgtttaccgccgagtccgccggtcgccgtgaagtgctgctg
gaactgcttgaacgcctgaaactgcggccgaaaacggtcgacagctggcaggacttcgtc
gatggcaaggacaggctggcaatcaccatcgccccgctggacgacggcctgctgctggag
caaccggcactggcgctggtcgctgaaagcccgctgttcggccagcgggtcatgcagcgc
cgccgtcgcgaaaagcgcaccgatggcggcaataacgacgccgtcatcaaaaaccttacc
gaactgcgtgaaggcgcgccggtggtgcacatcgaccatggcgttggccgctatctgggg
ctggcgacactggaagtcgaaaatcaggtcgccgaattcctgatgctggcctacgccgag
gatgccaagctgtacgtcccggtcgccaacatgcacctgattgcccgctacaccggcagc
gacgacgagagcgcgccactgcaccgcctgggctcggaaacctggcagaaagccaagcgc
aaggcggctgaacaggttcgcgacgtagctgccgaactgctggatatatacgcacgccgg
gcagcccgtgagggttatgccttcgccgacccgaaagccgactacgccactttcagcgcg
ggcttcccgttcgaagaaacgccggatcagcagaccaccatcgaggccgtgcgcgccgac
atgctggcacccaaaccgatggatcgcctggtgtgtggcgacgtgggcttcggcaagacc
gaagtggccatgcgcgccgccttcattgccgtgcacggcgggcgtcaggtggccattctg
gtgccgaccaccctgctcgcccagcagcactacaacagcttccgcgaccgtttcgcagac
tggccggtgacggtcgaagtgatgagccgcttcaagtcggcaaaggaagtcagcgccgcc
gttgccgatctggccgagggcaagatcgacatcgtcatcggtacgcacaagctgttgcag
gatgacgtcaagatcaagaatctcggcctagtgatcattgacgaagaacaccgcttcggt
gtccgccagaaagaacagctcaaggcactgcgcagcgaggtcgacattctgaccctcacc
gcaacgccgattccgcgaaccctgaacatggccgtgtcgggcatgcgtgatctgtcgatc
atcgccacgccaccggcgcgcaggctgtcggtacgcaccttcgtcatggagcagaacaag
ccgaccatcaaggaagccctgctgcgcgagttgctgcgcggcggccaggtctactacctg
cacaacgacgtcaaaaccatcgagaaatgcgcggcggatctggccgaactggtgccggaa
gcccgtatcggcatcggccacgggcagatgcgcgagcgcgaactcgaacaggtgatgagc
gatttctaccacaagcgcttcaatgtgctgattgcctcgaccatcatcgagaccggcatc
gacgtgccgagcgccaacaccatcatcatcgagcgtgccgacaagttcggcctggcccag
ctgcaccagttgcgcggccgcgtcgggcgtagtcaccaccaggcctatgcctacctgctg
accccgccgcgcaagcaaatcacccccgacgcggaaaagcgtctggaggcgattgccaat
acccaggacctgggcgcgggcttcgtgctcgccaccaatgacctagagatccgaggcgca
ggcgaactgctcggggacggccagagcggtcagatccaggccgtgggttttaccctgtac
atggaaatgctcgagcgcgcggtcaagtcgattcgcaagggcgaacagcccaatctcgat
caaccgttgggcggcggaccggaaatcaacctgcgtgtaccggcattgatccccgaagcc
tacctgccggatgtacacacccgcctgattctctacaaacgcatcgccaacgcggcagac
gaagaggcgttgaaagacttgcaggtagaaatgatcgaccgcttcggcctgttgccggag
ccgaccaagaacctggtgcgcatcacgctgctcaaactgcacgctgaacagctgggtatc
aagaaaatcgacggcggcccgcaaggtggacgcatcgaattcgcgaccgagactccagtt
gatccgctgaccctgatcaagctgatccagagccagcccaaccgttacaagttcgaaggt
gccacgctgttcaaattcctggtgcccatggagcgcccggaagagcgtttcaataccatc
gaagcgctgcttgagcgcctgaccccgaaaactgcttga
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