Pseudonocardia sp. HH130629-09: XF36_17420
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Entry
XF36_17420 CDS
T04082
Name
(GenBank) DNA glycosylase
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
pseh
Pseudonocardia sp. HH130629-09
Pathway
pseh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pseh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XF36_17420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseh03400
]
XF36_17420
Enzymes [BR:
pseh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XF36_17420
DNA repair and recombination proteins [BR:
pseh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XF36_17420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ALE84697
UniProt:
A0A0M4Q8R0
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All DBs
Position
3816571..3817446
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AA seq
291 aa
AA seq
DB search
MPEGDTVYLAGKRLHAALAGHELLRGELRHPRLVEHDLAGLTVTGVVSVGKHLFTRFDDG
RSLHSHFRMDGSWHLYRPGMRWRRGAHEARAVLATADRVAVGFALHDLELLPTDDEHTLV
GHLGPDLLDPAWGPAHDAEALRRMTARADHPLGLVLLEQRVMAGLGNLYRNDICFLLGLT
PWVPVRDVPDLPGVIDLSRRLLSSNKDRPEQTTTGSLAAGEAHWVFERAGRPCRRCGTRI
RTADQGDDHRARVTYWCQRCQAGPSPRPVRRGTGPRRGAPGRPPPGAARTP
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagggagacaccgtgtacctggccggcaagcggctgcacgccgcgctggccggg
cacgagctgctgcgcggcgagctgcgccacccgcggctggtcgagcacgacctggccggg
ctgaccgtcactggcgtcgtctccgtcggaaagcacctgttcacccgtttcgacgacggc
cgcagcctgcacagccacttccggatggacggctcctggcacctgtaccggcccgggatg
cgctggcgccggggcgcccacgaggcgcgcgcggtgctggcgaccgccgaccgggtcgcc
gtcgggttcgccctgcacgacctggagctgctccccaccgacgacgagcacaccctcgtc
gggcacctcgggcccgacctgctcgacccggcctggggccccgcccacgacgccgaggcg
ctgcgccggatgaccgcccgcgccgaccacccgctcgggctggtactgctcgaacagcgg
gtcatggccggcctcggcaacctctaccgcaacgacatctgcttcctgctcgggctcacc
ccctgggtaccggtccgcgacgtgcccgacctccccggggtgatcgacctgtcgcggcgg
ctgctgtcgtcgaacaaggaccgcccggagcagaccacgaccggctcgctggccgcgggc
gaggcgcactgggtgttcgagcgggccgggcggccgtgccgccgctgcggcacccgcatc
cggaccgccgaccagggcgacgaccaccgggcccgggtcacctactggtgccagcgctgc
caggccgggccgtcaccgcgcccggtgcgccgcggcaccggcccgcgtcgcggcgccccc
gggcggccgccgcccggcgcggcccgcacgccctga
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