Pseudomonas sediminis: HNQ25_16470
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Entry
HNQ25_16470 CDS
T07154
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HNQ25_16470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_16470 (mfd)
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNQ25_16470 (mfd)
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HNQ25_16470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QNG99879
UniProt:
A0A7G7RAS8
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All DBs
Position
3504666..3508103
Genome browser
AA seq
1145 aa
AA seq
DB search
MSVLRLPSLPASAGKQQWGNLPGAALSLTIAEAASDAGRFTLVLTEGSQSAERLQEELAF
FAPDLPVLHFPDWETLPYDVFSPHQDIISQRIAALYRLPQLSRGILVVPITTALHRLAPK
RFLLGSSLVLDVGQKLDVEQTRTRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPY
RIDLFDDEIETLRTFDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFR
RCPIYQDLSTGITPAGIEYYLPLFFEETDTLFDYLPGDTQVFSLPGIEKAAEQFWTDARS
RYEDRRVDPERPLLPPADIFLPVEDCFARLKSWPRVVVNQDDIEPGVGQTRFDARALPDL
AIQAKAGEPLAALRRFIEEYPGRVLFCAESAGRREVLLELLARLKLKPKEVEGWPAFVAS
SERLNICIAPLDEGLLLDDLALIAESPLFGQRVMQRRRREKGREGGDNVIKNLTELREGA
PVVHIDHGVGRYLGLVTMEFDGQAAEFLALQYADEAKLYVPVASLHLIARYTGSDDALAP
LHRLGSEVWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFQDPALDYATFSAGFPFEE
TPDQQAAIDAVRSDMLAGKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGKQVAVLVPTTLL
AQQHYNSFRDRFADWPVKVEVMSRFKSAKEVGDAVQQLAEGKVDIVIGTHKLLQDDVKFQ
NLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPA
RRLSVRTFVMEANKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIG
HGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIDRADKFGLAQLHQLRG
RVGRSHHQAYAYLLTPPRKQMTTDAEKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGD
GQSGQIQAVGFTLYMEMLERAVKAIQKGEQPNLDQPLGGGPEINLRVPALIPEDYLPDVH
ARLILYKRIANASDEDGLKELQVEMIDRFGLLPEPTKNLMRLTLLKLQAEKLGITKVDAG
PQGGRIEFAAETCVDPLTLIKLIQAQPKRYKFEGATVFKIQVPMERAEERFNTLEALLER
LAPTT
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtactgcgtcttccgtctctaccggccagcgccggcaaacaacagtggggcaac
ctgcccggggccgccctgtccctgaccatcgcagaagcggccagcgacgctggacgcttc
accctggtgctcaccgaaggcagccagagcgccgagcggctacaggaagagttggcgttc
ttcgcccccgacctgccagtgctgcacttccccgactgggaaaccctgccctacgatgtg
ttttcgccgcaccaggacatcatttcgcagcgtatcgcagcgctctatcgtctaccgcag
ctgagccgcggcatcctcgtagtgccgatcaccacagccctacaccgcctcgcaccgaag
cgcttcctgctgggcagcagcctggtgctggatgtcggccagaaactcgatgtggagcag
acgcgcacgcgcctggaggcggccggctaccgctgcgtggatacggtgtacgagcatggc
gagttcgctgtgcgcggcgcattgatcgatctgttcccgatgggcagcgacacgccctac
cgtatcgacctgttcgacgacgaaatcgaaaccctgcgcaccttcgaccccgaaacccag
cgctcggtggacaaggtcgagtcgatccgcctgctgccagcgcgtgagtttccgctggaa
aagaaagccgtcaccgatttccgcgggcgctttcgcgagcgcttcgacgtggatttccgt
cgctgcccgatctatcaggacctttccaccggcatcaccccagctggcatcgagtactac
ctgccgctgttcttcgaagagacggacaccctgttcgactacctgccgggcgacacccag
gtattttccctgcccggtatcgaaaaagccgccgagcaattttggacagatgctcgtagc
cgctatgaggatcgccgagtcgatccagagcgaccattgctaccgcctgccgacatcttc
ctgccggtggaggactgtttcgcccgcctgaagagctggccgagggtagtggtcaatcag
gacgatatcgagcctggcgtcggccagacccgcttcgacgcccgcgccctgcccgacctg
gcgatccaggccaaggccggcgagccgctggcagcgctgcgccgctttatcgaagaatat
ccaggccgtgtgctgttctgcgccgaatcggccgggcgccgcgaagtgctgctggagctg
ctcgctcgcctcaagctcaagcccaaggaagtcgagggctggccagccttcgtcgccagc
agcgagcgcctgaacatctgcatcgcaccattggacgaagggctgctgctcgacgacctg
gcgctgatcgccgagagcccgctgttcgggcagcgcgtcatgcagcgtcggcgccgcgag
aaaggccgcgaaggcggcgacaacgtgatcaagaacctcaccgagctgcgcgaaggcgca
ccggtggtgcatatcgatcacggcgtcggccgctacctgggcctggtgaccatggagttc
gatggccaggccgccgaattcctcgccctgcagtacgccgacgaagccaaactctacgtg
ccggtggccagcctgcacctgattgcccgctacaccggcagcgacgatgctcttgcgccg
ctgcaccgcctcggctcggaggtctggcagaaggccaagcgcaaggccgccgagcaggtg
cgtgatgttgccgccgagctgctcgatatctacgcccgccgcgccgcgcgcgagggcttc
gccttccaggacccggcgctggattacgccaccttcagcgccggcttccccttcgaggaa
accccggaccaacaggccgccatcgacgccgtgcgcagcgacatgctggccggcaagccg
atggatcgcctggtttgcggcgacgtcggcttcggcaagaccgaagtggccatgcgcgcc
gccttcattgccgtacacagcggcaagcaggtcgccgtgctggtgcccaccaccctgctc
gcccagcagcactacaacagcttccgcgaccgcttcgccgattggccggtaaaggtcgag
gtgatgagccgcttcaagagcgccaaggaagtcggcgacgccgtgcagcaactggccgaa
ggcaaggtggatatcgtcatcggcacgcacaagctgctgcaggatgacgtcaagttccaa
aacctcggcttggccatcatcgacgaggaacaccgcttcggcgtgcgccagaaggagcag
ctcaaggccctgcgcagcgaggtggatattctcaccctgaccgccacgcccatcccgcgc
accctgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccaccccgccggcg
cggcgcctgtcagtgcgcaccttcgtcatggaagccaacaagccgaccatcaaggaagcg
ctgctgcgcgaactgctgcgcggcggccaggtgtactacctgcacaacgacgtgaagacc
atcgagaaatgcgccgctgacctcgccgagctggtgcccgaagcacgtatcggtatcggc
cacgggcagatgcgcgaacgcgatctcgaacaggtgatgagcgacttctaccacaagcgc
ttcaacgtgctggtggcctcgaccatcatcgagaccggcatcgacgtgcccagcgccaac
accatcatcatcgaccgcgccgacaagttcggcctggcccagctgcaccagctgcgtggc
cgtgtcggccgcagccaccaccaggcctacgcctacctgctcactccgccgcgcaagcag
atgaccacagacgccgagaaacgcctggaggccatcgccaacgctcaggatctcggcgcg
ggcttcgtcctggccacccatgacctggaaatccgcggcgccggcgaactgctcggtgac
ggccagagcggacagattcaggccgtcggcttcaccctgtacatggaaatgctcgaacgc
gcggtcaaggccatccagaaaggcgagcagccgaacctcgaccagccgctgggcggcggc
ccggagatcaacctgcgcgtaccagcgctgatccccgaagactacctgcccgacgtgcac
gcccgcctgattctctacaagcgcatcgccaacgccagtgacgaggatggccttaaggag
ctgcaggtggagatgatcgaccgcttcggcctgttgccggagccaaccaagaacctgatg
cgcctgaccctgctcaagttgcaggcagagaagctgggtattaccaaggtcgacgccgga
ccacagggcggccgcatcgaattcgccgcagagacctgcgtcgacccgctgacgctgatc
aagctgatccaggcccaaccgaaacgctacaagttcgaaggcgccaccgtcttcaagatc
caggtgcccatggagcgcgcggaagagcgcttcaacaccctggaagccctgctcgagcgc
ctcgcgcccaccacctga
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